DreEX0046136 @ danRer10
Exon Skipping
Gene
ENSDARG00000068893 | mettl5
Description
methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
Coordinates
chr9:48426183-48430672:+
Coord C1 exon
chr9:48426183-48426284
Coord A exon
chr9:48429770-48429884
Coord C2 exon
chr9:48430491-48430672
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTCTGACTGTAGGCT
3' ss Score
7.65
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AAATGAAGCTGAAAGAGCTGGAGAGCTGCCTTCAGCAAGTGGATGGATTTGAGGAGCCCAAAATTCTCCTGGAGCAGTATCCCACCAGCCCTCACATCGCAG
Seq A exon
GCTGTATGTTGTACACCATCCACAACACATTTGATGACATACAGAATAAACTGGTGGCAGATCTGGGCTGTGGATGTGGAGTTCTGTCTATAGGAGCTGCAGTCCTTGATGCTGG
Seq C2 exon
CTTGTGTGTTGGATTTGACATCGATGAAGATGCCTTGGACATATTCAGAGGAAATGTTGAAGAGTTTGAACTGCCAAACATTGATGTGGTCCAGTGTGACGTGTGCTCGATTGGATCTTCTTATGCTAAGAAGTTTGACACGGTCATCATGAACCCGCCGTTCGGCACAAAACACAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068893-'1-4,'1-1,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063258=PrmA=PU(5.2=8.8)
A:
PF051759=MTS=PU(30.9=97.4)
C2:
PF063258=PrmA=PD(15.5=17.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGATTTGAGGAGCCCA
R:
GGTTGTGTTTTGTGCCGAACG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]