HsaEX0038924 @ hg38
Exon Skipping
Gene
ENSG00000138382 | METTL5
Description
methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
Coordinates
chr2:169819561-169824914:-
Coord C1 exon
chr2:169824489-169824914
Coord A exon
chr2:169821943-169822057
Coord C2 exon
chr2:169819561-169819643
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTATTTTTTAGCAT
3' ss Score
11.04
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
CGGCCTGGCGCTTCCGGCACCGGCCGAGGTGCGGGTCGCCTCCAGAGGTGCGTGGTCGTGGCGCGAGGGATCCTGAGGCTGCTCCAGCAGTGCGCCGCCGCCGTCTCCTGGGGCGGCTTGGGTTAGCCGGGAGGTGGGTCAGAGGCTCGCCCCGTGCCCTGCGTCCGGGCGTCTCCTTAGGGCGCGTCTTCGGGTCCGGCCAGCGGTGCTGAAAAAGGGAGAAGGTTGGGGGTAGGGAGGAAACAAGATCCCAGTTCAATAGATTTCTCCGCAGATCCTGTGCCTTCAAACCCTACGAGTCCATACTTTAAAACAAAATGAAGAAAGTAAGGCTTAAGGAACTAGAGAGTCGCCTGCAACAAGTGGATGGATTTGAAAAGCCCAAGCTACTTCTGGAACAGTATCCTACCAGGCCGCACATTGCAG
Seq A exon
CATGTATGCTCTATACAATCCATAACACTTATGATGACATTGAAAATAAAGTCGTTGCAGATCTAGGATGTGGTTGTGGAGTACTTAGCATCGGAACTGCAATGTTAGGAGCAGG
Seq C2 exon
GGACAGATATGGCTTTTCTAAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCCTTACACAAATCCTCAACTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138382_MULTIEX1-2/5=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063258=PrmA=PU(7.5=16.7)
A:
PF063258=PrmA=FE(71.7=100)
C2:
PF063258=PrmA=PD(18.9=37.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGTAGGGAGGAAACAAG
R:
ACTGCTGTTCTTGCCATTTCCA
Band lengths:
252-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development