BtaEX0022020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026008 | METTL5
Description
Bos taurus methyltransferase like 5 (METTL5), mRNA. [Source:RefSeq mRNA;Acc:NM_001099135]
Coordinates
chr2:26582629-26585245:+
Coord C1 exon
chr2:26582629-26583051
Coord A exon
chr2:26584603-26584717
Coord C2 exon
chr2:26585077-26585245
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATATTTTTTGATCTTTCAGCAT
3' ss Score
8.77
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGGCGGCCCTTCCGGCCCGGGCAGAGGCAGGAGCAGCTTCTGGAAGTGCAGGAACGTGGCGTGTGGATCCCTTGGCGACTCCAGTCGAGTAACCGTGCGGGATACCTTGTAGGCGGGTTGAAGCCTGGCCCCGGACTCCACCCGCCGCTGGCGCTAGGAGAAGAGCGGGAACCTCCTGGGCTGGATGTCCTCAGCTTGGCCCTCAGCCAGCGGCGCTGAAAAAGATACGGGGGATAGGGGTTGGTGAGATGCAGGTGAAGTAGGTTTCTTTACAGATCCAGCGCCTTTAAACCCTGCGCACACTTTTTTAAAAATGAAGAAATTAAAGCTTAAGGAACTAGAGAGTCGCCTGCAACAAGTGGATGGATTCGAAAAGCCCAAGGTCCTTCTAGAACAGTATCCTACCAGGCCGCACATTGCAG
Seq A exon
CATGTATGCTCTATACAATCCATAATACATATGGTGACATTGAAAATAAAGTGGTTGCAGATCTAGGATGTGGCTGTGGAGTGCTTAGCATTGGAACTGCAATGCTAGGAGCAGG
Seq C2 exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCATTGGAAATATTTAATAGGAATGTAGAAGAGTTTGAGTTAACAAATGTAGACGTGGTTCAATGTGATGTATGCTCATTATCTAACAGAATGTCCAAATCATTTGATACAGTAATTATGAATCCTCCCTTTGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026008-'1-1,'1-0,3-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(1.4=5.4)
A:
PF051759=MTS=FE(27.3=100)
C2:
PF051759=MTS=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCGCCTTTAAACCCTG
R:
AGCATACATCACATTGAACCACGT
Band lengths:
254-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development