GgaEX1035989 @ galGal3
Exon Skipping
Gene
ENSGALG00000009676 | METTL5
Description
NA
Coordinates
chr7:20035277-20036842:+
Coord C1 exon
chr7:20035277-20035436
Coord A exon
chr7:20036108-20036222
Coord C2 exon
chr7:20036661-20036842
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTTTCTCCCATCAGCAT
3' ss Score
9.15
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AATCATAGGAGAGTGGGAAGGGACGTGTGAGGATCGTGTCCCACTGGAAACATGAAGAAATTAAAGCTCAAAGAACTGGAAAGCTGCCTGCAGCAGGTTGATACCTTTGAAAGTCCAAAAGTGCTCCTTGAGCAGTACCCGACAAGACCCCACATCGCAG
Seq A exon
CATGTATGCTGTACACAATTCACAATACTTTTGATGATATTGAAAACAAAACAGTCGCAGATTTAGGATGTGGCTGTGGTATGCTCAGCATTGGAAGTGCAATGTTGGGAGCAGG
Seq C2 exon
ATTGTGTGTGGGGTTTGACATAGATGCAGAAGCATTGGAAATATTCAACAGCAACCTTGAAGACTTTGAGCTCACAAATGTTGATGTGGTTCAGTGTGATGTCTCCTCTTTACCCGACAGCATGTCAGAGACTTTTGACACAGTTATCATGAACCCTCCTTTTGGTACCAAACATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(0.7=2.4)
A:
PF051759=MTS=FE(25.5=100)
C2:
PF051759=MTS=FE(40.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGTGTCCCACTGGAAAC
R:
TGCTGTCGGGTAAAGAGGAGA
Band lengths:
252-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]