RnoEX0054043 @ rn6
Exon Skipping
Gene
ENSRNOG00000008469 | Mettl5
Description
methyltransferase like 5 [Source:RGD Symbol;Acc:1566062]
Coordinates
chr3:56109786-56113857:-
Coord C1 exon
chr3:56113497-56113857
Coord A exon
chr3:56110400-56110514
Coord C2 exon
chr3:56109786-56109967
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCTGATTGGTTGCAGCAT
3' ss Score
6.25
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GCACTTCCGGCGTTGCGGTGAGAGGCCGGGAGGACCAGCTAGCAGCTTCGGTGTGCTTTCTTGGCGCTCCTAGGTTCCACGGGCGGCAATCCCCGCGAGGCCCATGGGATTCCCTCGCTGAGTCCTTAGTAGTCCGTCCCGGATCCTACTCCCTACCCTCGCTTGCACCGCTGTGGAGTTTCGGGTTAGGTAGTCTTCCCTGCAGGTCCTGTGCTGTTAAGCCCCAGGAGCCCAAACTTTAATGAGAAAACGATGAAGAAGTTAAAGCTTAAGGAACTAGAGAGTCGTCTGCAAGAAGTGGATGGATTCGAAAAGCCCAAGTTACTTCTAGAACAGTATCCCACTAGGCCGCACATTGCAG
Seq A exon
CATGCATGCTTTATACAATCCACAATACATACGACGACATTGAGAGTAAAGCAGTTGCAGATCTAGGATGTGGTTGTGGAGTACTCAGTATTGGAGCCGCAATGTTAGGAGCAGG
Seq C2 exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCACTGGAAATATTTAATAAAAATGTGGAAGAGTTTGAGTTAACAAATGTCGATATGATTCAGTGTGATGTGTACTCATTATCTAGCAGAATGTCCAAGTTATTTGACACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008469-'0-4,'0-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(1.6=5.4)
A:
PF051759=MTS=FE(30.4=100)
C2:
PF051759=MTS=FE(48.8=100)
Main Skipping Isoform:
ENSRNOT00000011303fB8636
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTACTCCCTACCCTCGCT
R:
TCCAGTGCATCTTCATCTATGTCA
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]