MmuINT0032269 @ mm9
Intron Retention
Gene
ENSMUSG00000060703 | Cd302
Description
CD302 antigen [Source:MGI Symbol;Acc:MGI:1913455]
Coordinates
chr2:60090050-60095260:-
Coord C1 exon
chr2:60095090-60095260
Coord A exon
chr2:60090549-60095089
Coord C2 exon
chr2:60090050-60090548
Length
4541 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTTTTTTTTTTTTGCAGATA
3' ss Score
12.87
Exon sequences
Seq C1 exon
ATGCAACTTTCAAGTGGTATGATCATTCAAATATGACATTCGACAAGTGGGCAGATCAAGATGGTGAGGACCTAGTTGATACCTGTGGTTTTCTGTACACCAAGACAGGTGAATGGAGAAAAGGGGATTGTGAAATCTCTTCTGTGGAGGGAACACTTTGCAAAGCAGCAA
Seq A exon
GTAAGTCAACCATCTTTTCTCCAACCTAGGAGGGGTGGGGAGCACAGGGTTGGCTCTGAATACATTTCTTAGGTATACTGTGTCTGTCTCTCAGGTAGAGGGATTAGGACCTCAGAACAAAGCACGGTTGTGTGCTTATCTCTTGAAAGTCAAGTAGTTCTCCTCCATTTCAAAAGTGGAGCCAAATCACGGAAAGCAGACATCATTTAATTCTATATGCCTAGTCTGAGGAGTTCCTAAGGGCCCATACATTTCTTCTGTTTTCCAAAAGAATTTCCATGTTCTCTTTGCCTGTGATCTGACCGAGACGTAGTAAAGAATAATAATGCATAATCTTAAGATACTTCCATTATTTTACTTTCAGGAAATAGATTCTCTACAAAACTAGTGTGTTGGTTTAGGTAAACAAAATGGCATTTAAATTTGCATCATACTTCATACTTTAAAATAGAATAATTAAAATTAAAAATTTACCTGATTTATTAAAATTTATTTTAACAAAAATTAAAAGTTCTACAATTTTCATGTTATTTGTGAAACCTTGAATGTAATTTCTTCTAACATTCTGAGTAACTATTTTCTCAGTAAGCCAATGTAAATACTTAAAACGTTACTCAGCCGCTCCCCAGAGTAGTTTCATGGAAGATGCATCCCAACTGTAAACATTTCTGTTTTGTTTTATTCTATGTGTGTGTTTGGGTGTTGTGAGCTGGGGCTGCAGTGATGGCTCACTGCTTAAGATCACTGCTGCTCCTCCAGAGGACCCTGGTTGAATTCCCAGCAACCATATAGCAGCTCACAACTCTAACTCCAAGCCTTGGGAATCTTATGTTCTCTTCTGGCCTCCAAGGGCACGTGCAGAGATGTGCCTACAGGCACAACACCCATATATAAAAATAAACATCTAAACACCATTATCTTCTGACCTCTACACTGTGGTAGCCAAACACTCCCACAATCACCCTCATACACGCACATGCAAATTGGCTCTTTTCATTTACTGTGTTTGAGAGCACCATTATACAAAACAATACTAACTTAAGAATACCGGGAACAGAGACTGGAGAGATGGCTCAGAGACTTTAAGAACACTTATTGCACTTGCAGAGGACCTCAGCACACACATAGCCAGTTCCAGGCGTTCCTGTAGGGTTATGGGTCTCGAGGCTGCTTCATCACAGGGCACAGCTGCTCAGGGAGGCTGGACACAGGAGTTGACCATGCTTACTCCGGAAGGAATGACTGAGAAGAAAAGCTTATTGGCTAAGCCCTCCGGGCCTTTAGGTACCTCATTAAAACAGAGATCTGTCTTGAGCCTAAGTGACCACAGGTCACTCTATATGTGGAGGGGCTTGGGGCATTGCCCCTTCCACGACTGATGGCCACAAATCTATAGGGGTCTGCTGCTAGTGACAGGGGTCTGGTGCCCAGGAATCAGGCAAAACACCTACAGTCCCTTCAGGGTTTCTGGGGCTTCAAGCCTTAGCTCAACTGGGAACCAAGCTACCTCTCACAGTCCCACATCTTCTAACCTTCATGGGCACTGGGTATGCGATGTATTGCACACACACACAAAACACTCAAATATATGAACTCTCAAACTAATAAAAACGAAACAAACCACTGAGAAATTCCACAGCTGTTTAATTTTACATGTTTTCTACAGACTCTACAACCAGAAAATTTTCTCTCATTTATTATTATATTTTGTGACGCTCCTTTATTCTTTTTCTACCAACCAAGCCAATGCATTTGTCAGGTCTAGGTATCTGATTTTTAAAAAGTAAATTTGGAACAGGTAAGATAGAAACTTGACGATGCAGTAAAATGGGGATATTAAGCTCACAGAGTACCCATTTTAAAGAGCTGTATATAAAGTAAATCTTGTAAGGCATCCTTAAAACTTTTAATTTTGATTTTTCTTTTGCATTTTAGTCCCATATGACAAGAAGTATTTATCAGGTAAGTAACATTCAAATTTTAAAATTTTCACACGTTAAAATATATATTTAAGGGCTTTAGAGATAGCTCAGCAGTTAAGAACACGGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCAGCCACCACATGGTGGCTCATAACTCTCTGTAGTGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGAAACAGTATACTCACCTAAAACAAATAAATCTTTAAAAGTTAGTTTAAAAATTCTGTAACACTGAACACATGCACACACATAAAATTCCTCACATTAAGATACTACTGTACACTCACTTAGAAATATTATATAACATAATGAACTTTATCAGAATATAGACGTCTCTCTTTTTTGTTGTTATTTTTTGTTTTCCCCAGAGACAGGGTTTCTCTGTGTAGCCCTTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGACATGCGCCTATAGACGTCTCTTAAAGTAAGATATCACATTAGGGACTGGTAAGACATCGAAATGGTTCAGAGGTGAAGGGCGCTGGCTGCTCTTCCAGAGGACCCAGGTTCAATTCCCAGCACCACGCGGTCATTCACAACCTTCTTTGGCTCCAGTTCCAGGGCATCTCATGAGGACTTCTGGCCTCTACGGACATCACACACACGCATCTACAGGCACACGCACAGTTCACAAACATACATGCAGTCAAAACACCCATACGCATAAAACAAAAAATTAAAGTTAAAAGACATGACATTTAAATTATGCATGTAATGACTTTTAAATAATACCCTTTTCTGTGGAATTCTTAATGTTTTTGTGGAAAAGGACTATATACTGTCTAAAGGTTTCTTATCATAGTTATAAGTACAGTTCATAAAGAATATCTAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCTGAAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACATCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAGAATATCTATGCTAGTCCTTAAATGCATTCTTAAGACTCAAACCTGTGTTTGGGTTTTTGTTTGTTTTCAAGACAGAATTTCTCTGTGTAGCTCTGGTTGTCCTGTAGACCAGACTGGCCTAGAACTCAGAGATCCATCTGCCTCTGCCTCCTAAGTGCTGGGACTAAAGGCATGAGCCACCATCACCTGATTTAAATGCAGTTTTAAAGAGGAGTATGATTTGAATTTCAAACTATATGGGGCAACCATGGCTCCCATCTGCCTACCCTCATTGGGCACCATTCTATTCAATTTATTTTTTAACTTCTTTTTTAAGCTGGAAAACTATGTGGGGGATGTGGGAGTAAGGCAGGAAGTTGAAACATGTGACTTACTCTGCCTCTCTTATTCAATAATAGCTCAGTGGGTTTTTTCAGCTCAGTATCTATATATAAATTGGTTGGTCTGCATTCCCTGCCAGTATAGGATTTGTATTAAGCAGTGTGACACTTCCACTTGGATTTACTATTACAAACAATGCTTCGACAAGTGAATCACCTTGCACAAGTATATGTTTATCTAGAGGTTGCAATGTTGAAAATAGAATCTGTAAATCTGATATATTGGTCTTATTATAGAATTGTACTATTTTGCATTCCCAGTGGCAATGAGTATCTGTTGTGAAGGTTTCCAAATTCCACCAATTAGCAAACTCTACATCATTAGGTATAACAAGTGCAACATGCACTCTTGAATGCCACTTGATGTTTTATGTATCCACCAGAAGAACTGTCAGTCAAATCAAGATAGTTAATACTCCCACCACCACGTTCTCATCCTTCCCTCCAAAGGTCTATCTCGCCACCCAAACACTGGACTCTTGTCTTGCTAACATATCAGTTGTATAGTTTTCTTGCAGTGTTATTTCTATACATGTGTATTATTCACATCTGTATACATGTGATGATAAGTACTTGGCCTTTGCACCCTCCTCGGGGCACTCCTGATTAGTCACTGTATTATGACCCCTCATGAATGCAATATTAGCTGGCTAATTTCACTGGACACGTCCTTCCCACTCCAATGCCTGATGCCAGAGTTCTTGAACTTCACTGTAGTCTGTACTCTGGATTTTTGTTTGCTGTTTGTCTCACTGTGTAGCCCTAGAATTTTATATGCAGATCAAGCTGGCCACAAACTAACATTGACCCACCTGCCTTTGCCTCCCTGGGTACATCACGTATTTGTCTGGTTTTCCCTCTGGAACTTTGTTGATCTGTTTATATATACCTCTCCTCCCAATTGCTTAGCTATATGTTTATAGACATTTGCCCTTGCTTTCTAATGTTTAATTCTAATTTGGAATGAACATGAATAGAACTATAATATATAAACATTCTCGCCCTGACCAACCTTCTTAAAGTAACAGTTATGTTTAGTTAGAAACCATGTATACCGATTTCCTGGATTTTGTCTTTTTTTTTTTTTTTTTTGCAG
Seq C2 exon
ATAACCACATTTTAATATCGACTCTGGTGATCGCTAGCACAGTAACTCTGGCAGTTTTGGGAGCGATCATTTGGTTCCTCTATAGAAGAAACGCGCGCTCTGGCTTCACCTCTTTTTCACCTGCACCACTGTCACCTTACAGTGATGGCTGTGCCCTGGTAGTTGCAGAAGAAGATGAATATGCTGTTCAGCTGGACTAAGAGTTTGGTAATATCAGGCCAGCATATTGAATCCATTGACAATAATTTCCTGTGCAAGGTTTTCATATAAAAACTTGCCACAAAAACTGAGCCTTTTATGGTTATTCTTATATCAGTATTTTCATGTATTAAATGTGACAAAACATTAACCTTCTAAGAAAAAATATATATAAAATAAAAAATATAAAAATATTAAGTTTCAGAACAGGAACCATCCTGGATCTAACTTACACGTTTTCTTGTGTAGTTTTCATTTGAGTACATGAAAGCTGCAAGTACAATAAAGCTGGTAAAACGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060703-Cd302:NM_025422:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(50.0=94.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: