MmuEX0014084 @ mm9
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28701514-28703031:+
Coord C1 exon
chr2:28701514-28701557
Coord A exon
chr2:28702283-28702391
Coord C2 exon
chr2:28702961-28703031
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTTGTGTTTTGAAGGGA
3' ss Score
8.2
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATTTCTACAATAAATACAGTCTTAAAAATGTCCAGTATGACCAG
Seq A exon
GGAGCTGCTGCTGTTACTTGGGTGCCCGCAAGCCTCCTTTTGCTTTTCTGTGTGGAAATCTTACCTGTGTTACATGCTCCTAATTCAATGCTACACAGCAGGCAGGAGG
Seq C2 exon
TGTTCAGAAGCAGAGTATCCCAGTGCTGCTGGAAGGCAGAGATGCCCTAGTGCGGTCCCAGACGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=PU(0.6=6.7)
A:
NO
C2:
PF0027024=DEAD=FE(13.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTAAAAATGTCCAGTATGACCA
R:
GTCTGGGACCGCACTAGGG
Band lengths:
90-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: