MmuEX0014084 @ mm10
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28845994-28847511:+
Coord C1 exon
chr2:28845994-28846037
Coord A exon
chr2:28846763-28846871
Coord C2 exon
chr2:28847441-28847511
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTTGTGTTTTGAAGGGA
3' ss Score
8.2
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATTTCTACAATAAATACAGTCTTAAAAATGTCCAGTATGACCAG
Seq A exon
GGAGCTGCTGCTGTTACTTGGGTGCCCGCAAGCCTCCTTTTGCTTTTCTGTGTGGAAATCTTACCTGTGTTACATGCTCCTAATTCAATGCTACACAGCAGGCAGGAGG
Seq C2 exon
TGTTCAGAAGCAGAGTATCCCAGTGCTGCTGGAAGGCAGAGATGCCCTAGTGCGGTCCCAGACGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=PU(0.6=6.7)
A:
NA
C2:
PF0027024=DEAD=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTAAAAATGTCCAGTATGACCA
R:
GTCTGGGACCGCACTAGGG
Band lengths:
90-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types