MmuEX0003898 @ mm9
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:26945104-26951292:+
Coord C1 exon
chr2:26945104-26945279
Coord A exon
chr2:26949053-26949410
Coord C2 exon
chr2:26950923-26951292
Length
358 bp
Sequences
Splice sites
3' ss Seq
CACTTCTTCTCCTTTCCCAGGTG
3' ss Score
10.63
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCCTTGCAGATGAAGCTGGTTTCTACTTCTTCAATGGCAACTACAAAGTGGACAGCCCCAAGAACTTCAACATTGCTGGCACAGTGGTCAAGTACCGACGGCCCATGGATGTCTATGAGACTGGCATCGAGTATATAGTGGCACAGGGGCCCACCAACCAGGGCCTGAATGTCATG
Seq A exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCTATCACCTTCGAGTACACCTTGCTGCAGTCACCTCACATGCACCACCTGCCGCCTGTCTATTACAGCTTCTCTGAGGCAGCCTCCCAGAGCACAGAGAGCACCGAGCGGCAGGAGCTGGACAGTGCCAGGCTGCTGGGCTTCATGCAGCACAATGGCTCACTCTACCGCCAGACCTCCTCAGAGAGGCTGGGCCTGAACAGCCAGCTGTTTCAGCCTCCAGCCCCTGAGGTGGAGCTAGGTCCAAGCAGAGGCCAGGAGTCCAACGAGGTGTGCAAGCAAGCCAGCGGTGGGGTCTGTGAGGGACCTCCCAGGGGCAAGGGTTTCCAAG
Seq C2 exon
ACCACAATGCCACTGGGAGAGCTTTCTCCGCGGACAAGGATGACCGGGAGATCAGTGCCCATTTCACCTCCCACGAGCTTCTCTCAGCCAACACCATCTCCGACCAGCTCTTGGGCACAGGCTCTGAATCAGAAGAGTTCTCACTCAATGAGACCATGAATAGCATCTTTGCCCAGGGTGCTCCCAGAAGCTCCCCAGCTGAGAGCCTCTATGTGGATTATGAGGAGAATGAGGGGCCTGCTGCCTACTTGATCAATGGGTCTTACCTGGAGCTGAGCAGTGACAGGATCAACACCTCCTCTGAGGCCCCATTCCCCAACACCAGTGCCAGCCCCCCCAACTTGGCTGGGAACAGGACTCACAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.034 A=0.550 C2=0.742
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
PF059869=ADAM_spacer1=PD(14.4=14.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCCCATGGATGTCTATGA
R:
CTCAGCTCCAGGTAAGACCCA
Band lengths:
356-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types