BtaEX6047346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104484720-104491153:+
Coord C1 exon
chr11:104484720-104484895
Coord A exon
chr11:104489198-104489546
Coord C2 exon
chr11:104490781-104491153
Length
349 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTGCCGCCCCCAGGTG
3' ss Score
11.94
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTCTTGCAGATGAAGCCGGCTACTTCTTCTTCAACGGCAACTTCAAGGTGGACAGCCCCAAGAACTTCAACATCGCCGGAACCGTGGTCAAGTACCGGCGGCCCATGGACGTGTACGAGACGGGCATCGAGTACATCGTGGCACAGGGGCCCACCAACCAGGGCCTGAACGTCATG
Seq A exon
GTGTGGAATCAAAATGGCAAGAGCCCCTCCATCACCTTCGAGTACACGCTGCTGCAGCCGCCGCACACCCACCGCCTCCAGCCCATCTACTACAGCTTCTCGGATCCCACCTCTGACAGCGCAGAGAGCCAGGAGCTGGACGGGGCCGGGCTGGCAGGCTTCCTGCAGCACAACGCCTCCCTCTTCGGCCAGGCCTCCTCGGAGCGGCTGGGCCTGGACAACCGCCTGTTTGGCCACCGGGGCCCGGGGATCGAGCTGGGTCTGAGCAGAGGCCAGGAGAGCAACGAGGTGTGCGCGCAGGCCAGCGGCAGGGCCTGCGAGGGGCCCCCCAGGGGCAAGGGCTTCCGAG
Seq C2 exon
ACGGTAACGCCACCCTGACTGCTCTGGTGGGAGACCCGGACGACCGAGAGGCCGACGCCCGTTTCGCCTCCCAGGAGCTGCTGTCGGCCAACGCCATCTCTGATCAGCTGCTGGGCGCAGGCTCCGACTCCAGGGAGCTCTCCCTCAACGAGACCGTCAACAGCATCTTCTCCCAGGGTGCCCCGAGGGGCTCCCCAGCCGAGAGCCTCTACCTGGACTACGAGGAGAGCGAGGGGGCCGGAGCTTACCTGCTCAATGGGTCCTACCTGGAGCTGAGCAGTGACAGGCTGGCCAACACCTCCTCCGAGGCCCCCTTTCCCAACGCCAGCGCCAGCCTCCCCGCCTTGGCCGGGAACCGGACGCAGAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.393 C2=0.560
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
PF059869=ADAM_spacer1=PD(14.4=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAGCCCCAAGAACTTC
R:
CCTCGTAGTCCAGGTAGAGGC
Band lengths:
354-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]