GgaEX6015338 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6978289-6980362:+
Coord C1 exon
chr17:6978289-6978464
Coord A exon
chr17:6978965-6979304
Coord C2 exon
chr17:6979981-6980362
Length
340 bp
Sequences
Splice sites
3' ss Seq
AATAATGTCATGTTTGCTAGGTC
3' ss Score
7.08
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGTGGCTGATGAAGCTGGGTACTATTTCTTCAACGGGAATTACAAAGTTGACAGCCCAAAGAACTTCAACATTGCAGGCACGGTGTTCAAGTACCGCTGGCCCATGGATGTCTATGAGACTGGCATAGAGTATATTGTTGCACAAGGACCAACAAACCAAGGATTGAACATAATG
Seq A exon
GTCTGGAATCAAAATGGCAAAAATCCATCCATCACGTTTGAATACACTCTCTTGAGGAAGCCACACTCAAATCTCCAGCCCATCTACTACACCTTTTCTGAGTCAGATAGCGAAGAAAGCAGGGAGTTTGATGGAGACGTGCCATTGGGTTTTATCCAACACAACGCAACCTATTTTGGGAAGATCTCCAGGGAAAGGATAGACTTGGAGAACCAGGTGTTTGGAAGACAGGACACGGAGGAAGATTTAAACTTGAGCAAAGGTCAGGAAACCAATGAGGTCTATGAAAGAGCAGAAACAATTGACTGTGAGCCAAAACTGAAGGGCAAACAACCCAAAG
Seq C2 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGGCCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCCATCAATTCATCTGCAGAGACACCATTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'14-16,'14-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.430 C2=0.310
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
PF059869=ADAM_spacer1=PD(14.4=14.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACGGTGTTCAAGTACC
R:
TGCCATCACTGTCCTCGTAGT
Band lengths:
347-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]