RnoEX0006911 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5634828-5641040:+
Coord C1 exon
chr3:5634828-5635003
Coord A exon
chr3:5638742-5639099
Coord C2 exon
chr3:5640671-5641040
Length
358 bp
Sequences
Splice sites
3' ss Seq
TACTTCTTCTCCTTTCCCAGGTG
3' ss Score
10.24
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCTTGCAGACGAAGCTGGTTTCTACTTCTTCAACGGCAACTACAAAGTGGACAGCCCAAAGAACTTCAACATTGCTGGTACAGTGGTCAAGTACCGTCGGCCCATGGATGTCTATGAGACGGGCATCGAGTATATAGTGGCACAGGGGCCCACCAACCAGGGCTTGAATGTCATG
Seq A exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCTATCACCTTTGAGTACACGCTGCTGCAGTCGCCACACATGCACCACCTGCCGCCGGTCTATTACAGCTTCTCGGAGGCAGCCTCTGAGAGCACCGAGAGCACCGAGCGCCAGGAGCTGGACAGTGCCAGGCTGCTGGGCTTCCTGCAGCACAATGGCTCACTCTACGGCCAGCCCTCCTCAGAGAGGCTGGGCCTGAACAGCCAGCTGTTTCCGCCTACAGCCCCTGAGGTGGAGCTGGGCCCAAGCAGAGGCCAGGAGACCAACGAGGTGTGCAAGCAAGCCAGCGGTGGGGTCTGTGAGGGACCTCCCAGGGGCAAGGGCTTCCAAG
Seq C2 exon
ACCACAATGCCACTGGGAGAGCTCTCTTGGGGGACAAGGATGACCGGGAGATCAGTGCCCATTTCACCTCCCATGAGCTTCTCTCAGCCAACACCATCTCCGATCAGCTCTTGGGCACAGGCTCTGACTCGGAAGAGTTCTCACTCAACGAGACCATGAACAGCATCTTTGCCCAGGGTGCCCCCAGAAGCTCTCCAGCTGAGAGCCTCTATGTGGATTATGAAGAGAATGAGGGGCCTGCTGCCTACTTGATCAATGGGTCTTACCTGGAACTGAACAGTGACAGGATCAATACCTCCTCCGAGGCCCCATTCCCCAACACCAGCGCCAGCCTCCCCAGCTTGGCTGGGAACAGGACTCACAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'13-14,'13-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.575 C2=0.714
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
PF059869=ADAM_spacer1=PD(14.4=14.2)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000036995fB639
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGCAGACGAAGCTGGTT
R:
AGATGCTGTTCATGGTCTCGT
Band lengths:
344-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]