DreEX6014350 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65225392-65234429:-
Coord C1 exon
chr5:65234254-65234429
Coord A exon
chr5:65231500-65231800
Coord C2 exon
chr5:65225392-65225743
Length
301 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTTTTCTCAAAAGGTC
3' ss Score
10.89
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGTGACTGACCAAGCAGGGAACTTTTTCTTCAATGGGGCGTATAAGATGGACACCCCTCAGAACTTCCACGCCGCAGGGACCATTTTCAAATACCGGCGGCCCACCGATGTGTACGAGACGGGGATCGAGTACATCGTGGCGAAAGGGCCCATCGATCAGCCCATCAATGTTCTG
Seq A exon
GTCTGGAACCAGAATGGGCAAAATCCGTACATCACATATGAGTACACAGTGATGAGGGACTCTATGGCTTCTGTGTCACAGCCTCCCATTTACACGGGGCCGCAGGGAGGATCCAGTCTGGTTTCAGTGGAGGTTGTGAGTGTTTTACAGCATAACCAGAGCATGTATGATAAGAACCAGGAACAGACGACCGGACCCAGGGCTGTGGAGGGACAAAAGCCTGCTCAGGAAACCAATGAAGTGTATGAGACGGCTAACATTGACTGCGAGCAGGACGCTAACACACAAGTGCAATATACAG
Seq C2 exon
AGGGGAACTGCAGCTGGCCCAGTGCAGTAGGAGCTCCTGGGACAGCAACAGTCAGCCGACCGGCAGAGGACATGGTAAACTCTGAAAACCTGATCTGGAGAGTGCTTTTAGGAGAGCGGCTCGGCTCTGATGGTGTCCTCGCCAACATCTCCACCAACCAGCTTCTTACGCATCGAGATGGCTTATCGTCTGAAGCTGAGCCGATGGAGCTGGACTACAGCAGTTTGGAGCAAGCGGGTCTTAATGGCTCACTGCTTGAGTTTACCCTCGGAAACCGACGAAATGACACAGACCTCCTGCTCCCAAACAGAAATCTTACTGCCATTTTACGCAACCGTGGCAATCGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'6-9,'6-8,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.495 C2=0.322
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.2=100)
A:
PF059869=ADAM_spacer1=PD(14.4=16.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGACCAAGCAGGGAAC
R:
TGCGTAAGAAGCTGGTTGGTG
Band lengths:
346-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]