MmuEX0037404 @ mm9
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32067595-32071753:+
Coord C1 exon
chr2:32067595-32067811
Coord A exon
chr2:32068407-32070467
Coord C2 exon
chr2:32071566-32071753
Length
2061 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGGTTCCTTTTCAGGAA
3' ss Score
12.52
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GACTGATGAAGCCCATGATGCCCCAAGAGTCCCTCAGTGGGACTGGCTGTCGCTCTGAAGATCAAAACTGTGTGCCCTCGCTCCAAGAACGGAAAGTGACCGCCCTCGACCCAGCTCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAACAAAGGCTACTCACTGCCCCACCCGAAGTCTGCTGACACTCTGGCCATGGGCATGCATGTCAG
Seq A exon
GAATGAAAGGTCTTACTGTGCCTCCCCCGGAAGGCCAGGGGGCATAAGTGCCCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTTCTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTATTTCCACCCCAGGAAAATGTTCAGGAGGTGGGTGCTCCTGGGGGTTGTACCCCAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCAGCTGAGAAAAAGCCAGAGTATGGCAGCTGGGATGTTGGCCACCAGCCAAAGGCCGCCGACACAGCCAACGGTGTCGAGCTGGAGGCTCCCCGACAGGAGCCTTCCTTTCATGTTTCCTCTTGGGAGAAGGAAGGGAGCCCCAAGAAACAGCCAAACCCGGAGCCTGAGTGGACACCTGAGCCCCGGAGCTCCAGCGGCCAGCACCAGGAGCAGCCGGGCAGGACCCGGAGGTCAGGACCCATCAAGAAACCAGTTCTTAAGGCCCTGAAGGTAGAAGAGAAGGAGAAGGCCCTGGAGAGAGGCAGGCAGGGGCTTAGAGAGGAGAGCTCACAGCGGGCCCCAGAGAAAGAACCCGTGGGCAGGGCCGAGGAGGACGAAGAGAACAACCCTGCCCTAGCCAATGCCTCCTCCGCCCTGGAGGACAAGGCTGCCTCCCGGGCTGGTTTTGCCCACGAGGCTAGCAAGCTGGATGAAGATGAAAAGGCAGATAAGACCTGGGAGAGCAGGCCCTCAAGGGAGGCCAGTGACATTCCCCCAACCAAGAGAAACAACTGGATCTTCATTGATGAGGAACAGGCCTTTGGGGGACGGGGCCAGGCCCGTAGCCGTGGCCGCGGCTTCAGAGAGTTCACCTTCCGGGGCGGCCGGCCTGCAGGCAGCAGCACAAGTGGTCTTTGTGGCACGGGTGTCCTTGGGTCTCGTGGCATGTACAGTAGTGGCCAGCGCAGTAACCGAGGCAGGGGCCTGCGTGACTTCCCCCCACCAGAAGACTGCCCCAGAGCCAAGCCAAGGCGTCGCATTGCCAGCGAGACTCACAGCGAGGGCTCTGAGTATGAAGAGCTGCCCAAGAGGCGCCGGCAGCGGGGCTCTGAGCATAGCCACGAGGGCATGCTCACGGAGAGGGACGAGGGTGCCCTGAAGGACTCATGGCGCTCCAACAGAACTTACACCGAGGACCAGGGCGGTATAGACACCCGCAGCCGGGGATCCCGGACATGCGGGAGAGCCCTCCCACCCCGCCTGAGCAACTGCAGCTATGGCCGCAGAACCTTTGTTGCCAAAGAACCTCCCCACTGGCAGAGCAGGAGCCCAGGCAGCTCCTGGCAGGAATATGGCTCCTCTGACCCGTGTGGCCCACGGCGAGGCACCGACAGAGACTACATACCAGACTCCTACCGACAATCTGACACATTTGGAAGCAGGCTTTTTGAGGACAGCCGCACGGAGGACAAGAGGTCCTTTTTCCAAGATGACCATGGGGCAGATTCTGAAAATGCAGAAAACAGGCCCTTCCGTAGGAGGCGGCCCCCACGCCAAGACAAGCCCCCTCGCTTCCGGCGCCTCCGTCAAGAGCGGGAGTCCCTGGGCCTGTGGGGACCTGAGGAGGAGTCCCATCTGCTGGCAAGCCAGTGGCCAGGCCGGTCCAAACTCTGTCCTGGGGACAAGAGTGGTCCTGGAGGTCACAGATCCCCAGAGCTTTCCTACCAGAATTCCTCTGATCATGCCAACGAGGAGTGGGAGACCGCCTCCGAGAGTAGTGACTTCAGCGAGCGTAGGGAGCGGCGAGAAGGCCTCGTGGCTGAACCCGAAGCGCAAGGGGATGGTGGCCTCTCTGGGTCCAGTTTGGGTGAAAAGAAGGAGCTGGCCAAGAGGAGCTTCTCCAGCCAGAGGCCCCTGGCCGACAGACAGAGCCGCAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCTGTTAGGCCAGGTGGGGGTGAGCCTTCCCCCCGCTGCGAGAGCCAGCAGAGCGGGACGCCTCTGAAAGTCAAAAG
Seq C2 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGCAGCCATTCACCCTATGCCTTGGAGAGAACCACTCACGCCAGCTCTGACGGTCCTGAAACCCCCAGTAAGAAATCAGAGAGAGAGGTTTCTTTGCCTACCCAGAGGGCTAGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=0.946 C2=0.935
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: