HsaEX0007674 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134348895-134353336:+
Coord C1 exon
chr9:134348895-134349111
Coord A exon
chr9:134349841-134351922
Coord C2 exon
chr9:134353131-134353336
Length
2082 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGGTTCCTTTTCAGGAA
3' ss Score
12.52
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACTGATGAAGCCCATGATGCCCCAGGAGTCCCTCAATGGGACAGGCTGTCGCTCTGAGGATCAGAACTGTGTGCCCCCACTCCAAGAAAGAAAAGTGACCCCCATCGACTCACCCCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAGCAAGGGCTACCCGCTCCCGCACCCGAAGTCGAGTGACACCTTGGCTATGGACATGCGTGTCAG
Seq A exon
GAATGAAAGCTCTTTCTCTGCCTCACTCGGAAGGGCAGGGGGCGTAAGTGCTCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTACTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTGTTTCCACCCCAAGAAAATGTTCAGGATGCAGGTGCTCCTGGGGGTCACACCCAAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCAGATGAGAAAAAGCCAGAGTGTGGCAGTTGGGATGTTAGCCACCAGCCAGAGACCGCTGACACAGCCCATGGTGTTGAGCGGGAGACACCCCGGGAGGGGACGGCCTTTAACATCTCCTCCTGGGACAAGAACGGGAGCCCCAACAAACAGCCATCCTCGGAGCCTGAATGGACTCCCGAGCCCCGGAGCTCCAGCAGCCAGCACCCGGAGCAGACGGGCAGGACCCGGAGGTCGGGACCCATCAAGAAACCAGTCCTGAAAGCCCTCAAGGTGGAAGACAAGGAGAAGGAGCTTGAGAAGATTAAGCAGGAGCTAGGGGAGGAGAGTACCCGGCTGGCCAAGGAGAAGGAGCAGAGCCCCACGGCAGAAAAGGATGAGGACGAAGAGAACGATGCCTCTCTGGCCAACTCCTCCACCACCACTTTGGAGGACAAAGGCCCTGGCCATGCCACTTTTGGCCGCGAGGCCACCAAATTTGAAGAGGAGGAGAAACCTGACAAGGCCTGGGAAGCCAGACCCCCACGAGAGTCCAGCGATGTTCCCCCCATGAAGAGAAATAACTGGATCTTTATTGATGAGGAGCAAGCCTTTGGGGTCAGAGGACAGGCCCGGGGCCGGGGCCGTGGTTTCAGAGAGTTCACTTTTCGTGGTCGGCCTGCTGGCGGAAATGGGAGCGGCCTCTGTGGTGGGGGGGTCCTGGGGGCCCGCAGCATCTACTGCAGCAGTCAGCGCAGCGGCCGTGGCCGGGGCCTGCGAGAGTTTGCGCGGCCAGAGGACTGCCCCAGAGCCAAGCCCCGACGGAGAGTTGCCAGTGAGACCCATAGCGAGGGCTCAGAGTATGAAGAACTTCCCAAGCGCCGCCGGCAGAGGGGCTCCGAGAACGGGAATGAAGGCTCGCTCCTGGAGAGGGAGGAGAGCACCTTGAAGAAGGGCGACTGCAGAGATTCTTGGCGGTCCAACAAGGGGTGCTCTGAGGACCACAGCGGTCTAGATGCCAAGAGCCGAGGCCCTCGGGCCTTTGGGCGAGCCCTCCCTCCCCGGCTGAGCAATTGCGGGTATGGACGGAGAACCTTCGTCTCCAAAGAGTCACCCCACTGGCAGAGCAAAAGTCCAGGCAGCTCTTGGCAGGAATATGGCCCTTCCGACACATGCGGATCCCGGCGACCTACAGACAGAGACTATGTCCCAGATTCCTACAGACACCCTGACGCATTTGGTGGCCGGGGCTTTGAGGACAGCCGCGCGGAGGACAAGAGATCCTTCTTCCAAGATGAACACGTGGCAGATTCTGAAAATGCAGAGAACCGGCCCTTCAGGAGAAGGCGCCCCCCACGCCAAGATAAGCCCCCTCGATTCCGGCGCCTCCGGCAAGAGCGGGAGTCCCTGGGCCTGTGGGGACCCGAGGAGGAGCCCCACCTGCTGGCAGGTCAGTGGCCAGGCAGGCCCAAACTGTGTTCTGGGGACAAGAGTGGCACTGTGGGCCGCAGGTCCCCTGAGCTCTCCTACCAGAACTCCTCCGATCACGCCAATGAGGAGTGGGAGACGGCCTCCGAAAGCAGCGACTTCAGCGAGCGGCGGGAGCGGCGGGAAGGCCCTGGGTCCGAGCCCGACTCCCAGGTGGATGGTGGCCTGTCGGGGGCTAGTTTGGGTGAGAAGAAGGAGCTGGCCAAGAGGAGCTTCTCCAGTCAGAGACCCGTGGTTGACAGACAGAGCCGAAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCCGTTAGGCCAGGTGGTGGTGACACCTCCCCTCGCTATGAGAGCCAACAGAATGGGACGCCTTTGAAAGTGAAAAG
Seq C2 exon
ATCCCCAGACGAGGCCTTGCCTGGAGGTCTTAGTGGCTGCAGCAGTGGGAGTGGCCACTCCCCCTATGCCCTGGAGCGGGCAGCCCATGCCAGTGCTGACCTTCCCGAAGCCTCCAGTAAAAAGGCAGAGAAGGAGGCCAAGTTGGCTGCTCCGAGGGCAGGTGAACAGGGAGAGGCCATGAAACAGTTTGACCTGAACTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.919 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)