RnoEX0070297 @ rn6
Exon Skipping
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11230249-11234434:+
Coord C1 exon
chr3:11230249-11230465
Coord A exon
chr3:11231022-11231214
Coord C2 exon
chr3:11234247-11234434
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGGTTCCTTTTCAGGAA
3' ss Score
12.52
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACTGATGAAACCCATGATGCCCCAAGAGTCCCTCAGTGGGACTGGCTGTCGCTCTGAAGATCAAAACTGTGTGCCCTCACTCCAAGAACGAAAAGTGACCGCCATCGACCCGGCTCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAACAAGGGCTACTCACTGTCCCACCCGAAGTCTGCCGACACTCTGGCCATGGGCATGCACGTCAG
Seq A exon
GAATGAAAGGTCTTACTGTGCCTCCCCCGGAAGGTCAGGGGGCATAAGTGCCCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTTCTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTATTTCCACCCCAGGAAAATGTTCAGGAG
Seq C2 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGAAGCCATTCACCCTATGCCTTGGAGAGGACCACTCATGGCAGCTCTGACGGTTCTGAAACTACCAGTAAGAAAACAGAGAAAGAGGTTTCTTTGGCTGCCCAGAGGGCTGGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.637 A=0.878 C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000088576fB11456
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGTGTGCCCTCACTCC
R:
TTTCAGAACCGTCAGAGCTGC
Band lengths:
246-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]