DreEX6014810 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71250172-71257092:-
Coord C1 exon
chr5:71257031-71257092
Coord A exon
chr5:71253993-71255082
Coord C2 exon
chr5:71250172-71250476
Length
1090 bp
Sequences
Splice sites
3' ss Seq
TCAAACTCTGCCCCCTACAGGCT
3' ss Score
8.13
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GTGGAGGATAAAGAGAATGAGAAGCCCAAAGCGGAGCCTGAGGAGAAGCCGGTCCCCTACAG
Seq A exon
GCTGGAGAAGGAGGTGATCACCAATGTGTACGACCTGAAGAAAGACGCTCCGCACGTTTCAAACAGACACTCCAGCAGCGTCGAAGACAAACAAGCAGACGCTCTGAAGATGGAGAAAACCAGCGCGTTATCTGAAGAGCTCCACAAGGAGAGCTGCTGGGAGAAATCCCAATCCGACTGCTCCGACAGCAGAGATCCGACCGCTCCGAGGCGCAACAACTGGATCTTCATTGATGAGGAGCAGGCGTTCGCTGGAGCACGCGGTCGAGGACGGGGACGTGGCTTTCGGGAGTTTAATTCTCGCGGAGGCGGAGCTCGTGGAGGACGCAGCGACACTAATAGAGGAGCGTACAATAATAACAACAACAACACGGGCGCTCAGAGACTCACACGAGGACGCGGAAACCGAGTGTTTAGAGGGGACGATCTGCAGAGGGGAAAACCGCGCAGACGAAACGTCAGCGAAACGCACAGCGAAACCTCCGAGTACGAAGAGCAGCCCAAACGTCCTCGGCAGAAGGTGTCGGAGAACGGCGGAGAAGCGTCAGGAGAGGTTAAAAAAGCCGACAGGGAATCCTGGAGATCCAATAAAGTCTACACTGACGATCAAAGCGAGAAACCCAAATCTAGAGTGTTCGGGCGTTCGTTCCCGCCGCGCCTCAATGCCGCGTATAATCGCGGATTCACCGGAACCAGAGATATTTCAACGTGGAGAGGAAGAGGAACGCAATTCGGGAGTTCCTCCAGTCAGGAAAACGGCTACAATTTCGTTGCGGACTCTTATTCGAAGCGCACCGAGCCGCTGAAGTATCCTGCTAAATTCACGGGCACGTTTGCGGAGAACGGCGTGGAGGATCGTGACGGAGGATATTATGTTGATGATAATCCGGATAATCGTCCGCTGAGGAGAAGGCGTCCACCACGGCAGGATAAACCTCCACGGTTCCGCCGTCTGCGTCAGGAGCGGGACGGAGCGGGAGCCTGGAGTAATGATGACTACGTGAACGGAGAGTTTCCCAATCAGTGGCCGAGCAGAGCGAAGAGTGCGGAGGAGCACTGGCAGAATCACTACCCTGGAGGACGCTCGCAG
Seq C2 exon
TCACAGGAGATGACGGCTCAGAGTCAGGGTGAGGACTGGGAAACGGGTTCAGACAACAGTGATTTCGGTGACTGGCGGGAGAAGCGAGGGCCGCACGGGGATCCGCTGACAGACGCGGCTCTCGGAGATCCGGGATCTGAGAAGAGAGAACTCTCCAAACGCAGCTTTTCCAGCCAGCGGCCGCTGGACCGACAGAACCGCAAGAATGACGTGTCTGTGATGGAGAACAGCAAGATGGGCCGTCCGGCAGATGCAGGATCCAGAAACGACAGCTGGCAGAATGGAGTCGCGTCCGGCAGCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'18-25,'18-23,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.974 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATAAAGAGAATGAGAAGCCC
R:
GACTCCATTCTGCCAGCTGTC
Band lengths:
348-1438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]