GgaEX7009788 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6199406-6203350:+
Coord C1 exon
chr17:6199406-6199625
Coord A exon
chr17:6200263-6202329
Coord C2 exon
chr17:6203151-6203350
Length
2067 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTGTTTCCTTCATAGAAA
3' ss Score
8.57
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAATTATGAAGCCCATGATTCAGCAGGACTCCATCGGTGGGAACAGCTGTCGATCTGAAGATCAGAACTGTCAGGCAGGTCAGGTGGAAAGGAAGGCTGCTCCCATGGACCCTGTGCCAGTATGGGGCCAGGAGAGCTATGCATCTCTGCAGAGCAAAGGGTACTCCCTGTCACATCAAAAGCAGTCTGACAACATGACCATGGAGGGGCTGCATGCCAG
Seq A exon
AAATGGCAGTTCTTACTCTTCCTCTCCCGGAAGGCCAGAGAATCTGAACACCCAGCGAGATCTCTTTGAGGAAAGAGGGGAGGAATACTTGAATGCTTTTGACAAGAAGACCCAAGGAGACTTTGACAGCTGCCTGTCTTCTCAGAGGCTAGGCCAAGATCTCTTATTTCAGCATCAGGAGAGTGTGCAGGAAACCTGTCCTTCCAGCAACCGCCATGCAAACTTGAGATGTTCACCTCTAGAGCCTGACTTTATCCAAGCAGAGAAGAAACCGGAATATAATGGCTGGGATATCAGCCACCATCAGAAACCTTCAGAGCCTGCAGCAGAGATTACTGAAGAAGTTCCGAGAAATGAGCAGTCATTCGCTGCTGACCCATGGAAGAAAGAAGGAGCTAGTAATACCAAACAGCCTGCTGAAGAGACAACAGAGTGGGCCCCTGAAAACCGAAGCACAGGTGTTCAACAGCAGGAGCAAATTGGGAGGACACGGCGATCAGGCCCAATCAAAAAGCCAGTTCTGAAAGCCCTCAAGGTGGAGGAGAAGGAGAAGGAGATGGAGAAGGTCAAACTGGAGGGAGAGGACACCTCACGCCATCTGAAGGAGAAGGTGACTGTTCAGAAAGTGGAAAACGAATCAGACGACTCTGCAGCCTTACTGAACTCCACACGTTATCTGCTGGATGACAAAGGCTCTTCCCAAGCCAGCCTTGCCCGAGAGGCTGAGAAGTCACAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGATAAGCCAGAAAGAACCTGGGAGAACAAGGTCTCCAGAGAATCCAGTGAGCTTCCTCCCACTAAAAGAAATAACTGGATCTTCATTGATGAAGAGCAAGCCTTTGGTGGGAGAGGTCAAGGGCGTGGGCGAGGGAGAGGCTTCAGAGAATTCACTTTCAGGGGCCGAGGCACTGTTGTGAGCAGTCGGGGAGTCTATAACAACCAGCGGAGCAGCCGAGGGCGAGGGCTCCGGGAGTTCAACCAGCCAGAGGACTTCCCCAGGGGCAAGCCAAGGCGACGGATTGCAAGTGAGACGCATAGCGAAGGGTCAGAATATGAGGAACTCCCCAAACGTCGCCGGCAGAGGGGCTCAGAAAACAGCAATGATGGCTCTGTGCTGGACAGAGAGGACAGTGATTTGAAGAAGGGAGACTTCAAAGAGTCTTGGAGGTCCAACAAAATCTATTCAGATGATCACACTAGTCTCGACCCTAAGATGAGGGCCCCAAGAGCTTTTGGGAGATCACTGCCACCAAGACTAAGCAACTCTGGCTATGGGCGAAGAGGTTTCATGGGCAAGGAGCCAACCCAGTGGCAAGGCAGGAGTGGGGGAGCGGGGTGGCAGGAGTACAGCCACACTTCTCCATCAGATGGTTTTGGGAGCCGGCAACAGTCTGACAGAGACTACATTCAGGATTCTTACAAACACGTGGATTCTTTCTCTAGCCGGGTTTTTGATGAGAGCCATTTGGATGACAAGAGGCACTTCTTCCAGGAGGATTACTTAGCAGATCAGGAGAACATAGAGAACAGGCCATTCAGGAGGCGGCGTCCCCCCCGTCAAGACAAGCCCCCACGCTTCAGGCGCCTCCGGCAAGAACGAGAATTGGTTGGGCAGTGGAACCCTGAGGAGGGAGGCCCCAACCTGCTGCCCAGCCAGTGGCCAGGACGGCCCAAGCTGAGCACCGCAGAGAAGAGCAGCATCTCGGGCAGACGGTCTCCTGAGCTATCCTACCAGAACTCCTCAGATCATGCCAACGAGGAGTGGGAGACAGCATCTGAAAGCAGTGACTTCAGTGAGCGTCGGGAGAGGCGAGATGGAGTTTCAGAGAGTGAGGGCCAGCTGGAGAGTGGCCTTGGGAGTGGCAGCTTGGGAGAGAAGAGAGAGCTAGCAAAGAGGAGCTTCTCAAGCCAAAGGCCGCTGGTGGACAGGCAGAACCGCAAGGCTGAGCCAGCAGGGTATGCGGAGCAGTCTGTCCGGACTGTAGGAGCAGCTTCACGATATGAGAGCCAGCAGAATGGGACACTCATAAAAAGCAAAAG
Seq C2 exon
ATCTCCAGAAGAAGGAGGGGGCCTTGGCAACACCAGTGGTGGGAGCAGCCACTCCATTTACAGCCTGGATAGGGCCTCTCTTGCGAACTCAGAGAGTGCTGAAGGGCCGGGTAAAAAGTCAGAGAAGGAGCCAAAGTCTGCTGTGCAGAGAGCAAGCGAAAAGGGAGAGACATTATCACAGTTTGAACTGAATTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'25-26,'25-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.926 C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000005992fB11015
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]