BtaEX0028673 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101624839-101629223:+
Coord C1 exon
chr11:101624839-101625055
Coord A exon
chr11:101625685-101627751
Coord C2 exon
chr11:101629027-101629223
Length
2067 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGGTTCCTTTTCAGGAG
3' ss Score
11.63
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATTGATGAAACCCATAATGCCCCCGGATTCCCTCAGTGGGACTGGCTGTCGCTCTGAGGACCAGAGCTGTGTGCCCCCGCTGCCAGAAAGGAAGGTGACCGCCATTGACCCTGCCCCCGTGTGGAGCCCTGAGGGTTACATGGCGTTGCAGAGCAAGGGCTACTCGCTGCCCCATCCGAAATCCAGCGACAATATGGCCATGGACATGCATGTCAG
Seq A exon
GAGTGAAAGCTCTTACTCTGCCTCCCCCGGAAGGTCAGGGGGCGTGAGTGCCCAGCGCGAGCTCCTTGAGGAGAGAGGGCAGGAGTACTTGAGCGCTTCTGACAAGAAGGCCCCAGCAGACTGTGACTCCCGTGTCTCCTCTCAGAGAGTAGGCCAGGAGCTTTTGTTTCCACCCCAAGAAAATGGGCAGGAAGCAGGCACTCCTGGGAGTCACACCCCAAACCTCAGGTGCTCCCCACTGGAGCCCGACTTTGCCCCCACGGAGAAAAAGCTCGAGTATGGTGACTGGGATGTGAACCACCAGTCAAAGGTTGCCAACCCAGACGCTGCGGTTGAGAAGGAGGTACCGCGGGAGGAGCCACCCTTCAGCGTCTCCTCCTGGGAGAAGGAAGGGAGCCCGAGCAAGCCGCCGGCTCTGGAGCCCGAGTGGACGCCAGAAGCCCGGGGCACTGGCAGCCAGCACCCGGAGCAGACCAGCAGGACCCGTAGGTCCGGCCCCATCAAGAAACCTGTCCTGAAGGCCCTCAAGGTGGAGGACAAGGAGAAGGAGCTCGAGAAAGTAAAGCCGGAGCTGGCAGAGGGCAGCACCCGCCTGGCCCGGGAGCCAGGGCCTGTCCATGAAGTGGCTGAGGACGAGGACCAAGAGAACGACCCCGCACTGGCCAATGCGGCCCCGGCCACCTCGGAGGACCAGGGCTTAGCCCGTGCCAGCTTGGGCCGTGAGGCCAGCCGTCCTGAGGAGGACAACAAGCCGGATGGGGCCCCGGAGGCCAGACCCTCCAGGGAGGCCAGCCACACACCCCCGACCAAGAGGAATAACTGGATCTTTATTGATGAGGAGCAAGCCTTTGGGGGCCGGGGGCCAGCCCGGGGCCGAGGCCGCGGGTTCCGAGAGTTCACCTTCCGCGGGCGGCCCACCGGTAGTGGCCTGTGTGGCGGGGGCGTCCTTGGGGCACGCGGCCTCTACAGCGGCAGCCAGAGGAGTAGCCGGGGCCGGGGGCCGCGGGAGTTTGGGCCGCCGGATGACTTCCCCCGGGCCAAGCCCCGGCGGAGGATTGCCAGTGAGACCCACAGCGAGGGCTCTGAGTATGAGGAGCTCCCCAAGCGGCGGCGGCAGCGAGGCACTGAGCCTGGGGATGAGGGTGCGCTCCCGGAGCGGGAGGAGGCCACGGGAAGGAAGGGCGACTTCAGGGAGTCCTGGCGGTCCGGCAGGATGCACCCTGAGGACCATGGTGGGCCTGAGGCCAAGAACCGAGGTCCCCGGGCCTTCGGGCGTGCCCTGCCCCCGCGTCTGAGCAACTGTGCATATGGCCGGAGAACCTTCGCGGCCAAGGAGGTGGCCCCTTGGCCCAGCCGGGGTCCTGGCGCCTCCTGGCAGGAGTCTGGCGCCTCTGACGCATGTGGAGCCCGGCGGCCCTTAGACAGAGACTACATCCCAGACGCCTACAGACGCCCCGACGCCTTGGGCTCCCGGGGCTTCGAGGATGGCCGCCTGGAGGACCGGAGGGCCTTCTTCCAAGATGACCACGCCGCAGAGTCCGAAAACGCAGAGAACCGGCCCTTCCGGCGAAGGCGGCCTCCGCGCCAGGACAAGCCGCCCCGCTTCCGGCGCCTCCGGCAGGAACGGGAGGCCCTGGGCCTGTGGGGGCCGGAGGACGAGCCACCTCTGGCAGCCGGCCAGTGGCCAGGCCGTCCTAGACCCTGCCCCGGGGACAGGAGCAGCGCCTCAGGCCGCAGGTCCCCTGAGCTCGCCTATCAGAACTCCTCCGACCACGCCAACGAGGAGTGGGAGACGGCCTCCGAGAGCAGTGACTTCAGCGAGAGGCGGGAGCGGCGGGCCGGCTCCGAGCTGGACCCCCAGGCTGATGGCAGCCCCTCTGGGGTGAGCGCAGGCGAGAAGAAGGAGCTGGCCAAGCGGAGCTTCTCGGGCCAGAGACCCCTGGTGGACAGGCAGAGCCGGAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGTCTGTTAGGCCAGGTGGCGGTGACACTTCTCCCCGCTATGAGAGTCATCAGAACGGGACGCCTCTGAAAGCCAAAAG
Seq C2 exon
GTCCCCAGACGAGGCCTTGCCTGGAGGTCTTGGCTGCGGCAGTGGGAGCGGCCATTACACGCTGGAGCGGGCAGCCCATGCTGCCTCTGACGTCACCGAAGCCTCCTGTGAGAAGGTAGAGAAGGAGGCCAAGCTGGCCGCCCAGAGGTCAGGCGAGCAGGGAGAGACCATGAAACCATTTGACCTGAACTACGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=0.991 C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development