RnoINT0118602 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11230249-11234434:+
Coord C1 exon
chr3:11230249-11230465
Coord A exon
chr3:11230466-11234246
Coord C2 exon
chr3:11234247-11234434
Length
3781 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGCTCCTCCTTCCTTTGCAGGTC
3' ss Score
13.42
Exon sequences
Seq C1 exon
GACTGATGAAACCCATGATGCCCCAAGAGTCCCTCAGTGGGACTGGCTGTCGCTCTGAAGATCAAAACTGTGTGCCCTCACTCCAAGAACGAAAAGTGACCGCCATCGACCCGGCTCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAACAAGGGCTACTCACTGTCCCACCCGAAGTCTGCCGACACTCTGGCCATGGGCATGCACGTCAG
Seq A exon
GTGAGCTTCCCTCTGCGGTTGAAGGAAGACTCCGCAGTCCCAGTGGAGGGCCCCAGGAAGAGGCCAAACCCCAGGAGACACAGCCCCCGGGCGGGCGGGGAGGAGTGTGAGCGGGTGTGCTTGAGTGTGATGTGAGTGGCTCTCTCTGATGGCCGGACTGAGGCACAGGAGGAACCCCGTGGTCGTCGGACGGTGGGCATGGAGTAAAGGGGCAGTGGGTGGGCTCCCAGGCAGGGGGTTGAGAGCCCTGCCACCCCAGGCCCAGGCTCACGACTCCCAGGCTCCAGCTTGTTCAGTGCTCCAGGGGACCGCCAGCTCCTCTGTCTCCAGGGTGGCGCACTGAGCCGCCACTGACGTCTCCACGCTCACGGACTCCAGGCCCACCGAGCAACGTGTCATAAGCTAGACCAAATGTTTGTGTTTTCTTTTCTTTTTAAAAAACTTCTTTTTTTCTTTTTAAAACAAAACAAAACAAAGCAAAACTAAGCCCCGTTCAGCATGGAGGCCAGGAACCAAGCTCCAATCACATTGACTGATTTTTCTGGTTCCTTTTCAGGAATGAAAGGTCTTACTGTGCCTCCCCCGGAAGGTCAGGGGGCATAAGTGCCCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTTCTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTATTTCCACCCCAGGAAAATGTTCAGGAGGTGGGTGCTCCTGGGGGTTGTACCCCAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCGGCTGAGAAAAAGCCAGAGTGTGGCAGCTGGGATGTTGGCCACCAGCCAAAGGCTGCCGACATGGCCAACAGTGTCGAGCTGGAGGCGCCCCGGCAGGAGCCTTCCTTTCATGTTTCCTCTTGGGAGAAGGAAGGGAGCCCCAAGAAACAGCCAAACCCAGAGCCCGAGTGGACACCCGAGCCCCGGAGCTCCAGCGGCCAGCAGCAGGAGCAGCCCGGCAGGACCCGGAGGTCAGGGCCCATCAAGAAACCTGTTCTCAAGGCCCTGAAGGTGGAAGAAAAGGAGAAAGCCCTGGAGAGAGTCAGGCAGGGCCTTGGAGAGGAGAGCTCACAGAGGGCCACAGAGAAAGAACCCCCGTGCAGGGCGGAAGAGGACGAGGATGAGGAGAACAACCCTGCCCTAGCCAACGCCTCCTCGGCCCTGGAGGATAAGGCTGCTGCCCGGGGTGGGTTTGGCCATGAGGCTAGCAAGCTGGATGAAGAAGCAAAGACTGACAAGACCTGGGAGAGCAGGCCCTCAAGGGAGGCCAGTGAGATTCCGCCACCCAAGAGAAACAACTGGATCTTCATTGATGAGGAGCAGGCCTTTGGGGGCCGGGCCCAGGCCCGTAGCCGTGGCCGTGGTTTCAGAGAGTTCACCTTCCGGGGCGGCCGGCCTACAAGCAGCAGTACAAGTGGTCTTTGTGGCACAGGCGTCCTCGGGTCTCGTGGCATGTACAGTGGTGGCCAGCGCAGTAACCGAGGCAGGGGCCTGCGTGACTTCCCCCCACCAGAAGACTGCCCCAGAGCCAAGCCAAGACGGCGCATTGCCAGCGAGACCCACAGCGAGGGCTCCGAGTACGAAGAGCTACCCAAGAGGCGCCGGCAGCGGGGCTCAGAGCCCAGCCACGAGGGCATGCTCACAGAGAGGGACGAGGGCGCCCTGAAGGACTCATGGCGCTCCAACAGGACTTACACAGAGGACCAGGGTAGTCTAGACGCCCGCAGCCGGGGACCCCGGACATGCGGGAGAGCCCTCCCACCTCGCCTGAGCAACTGCAGCTATGGCCGCAGAACCTTTGTTGCCAAAGAACCTCCCCACTGGCAGAGCAGGAGCCCAGGCAACTCCTGGCAGGAATATGGCTCCTCTGACCCGTGTGGCCCACGGCGAGCCACTGACAGAGACTACATACCAGACTCCTACCGACACTCTGACACATTTGGCAGCAGGCTTTTTGAGGACAGCCGCACGGAGGACAAGAAGTCCTTTTTCCAAGATGACCACGGGGCAGATTCTGAAGGTGCAGAAAACAGGCCCTTCCGTCGGAGGCGGCCACCACGTCAAGACAAGCCCCCTCGCTTCCGGCGCCTCCGTCAAGAGCGAGAGTCCCTAGGCCTGTGGGGACCTGAAGAAGAGTCCCATCTGCTGGCAAGCCAGTGGCCAGGCCGGTCCAAACTCTGTCCTGGGGACAAGAGTGGTCCTGGAGGTCACAGATCCCCAGAGCTTTCCTACCAGAATTCTTCTGATCACGCCAATGAAGAGTGGGAGACCGCCTCCGAGAGTAGCGACTTCAGCGAGCGTAGGGAGCGGCGAGAAGGCCTCGCAGCTGAACCTGAAGCACAAGGGGATGGTGGCCTCTCTGGGGCCAGTCTGGGTGAAAAGAAAGAGCTGGCCAAGAGGAGCTTCTCCAGCCAGAGGCCCCTGGCTGACAGACAGAGCCGCAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCTGTTAGGCCAGGTGGGGGTGAGACTTCCCCCCGCTGCGAGAGCCAGCAGAGTGGGACGCCTCTGAAAGTCAAAAGGTAACACGTCAGCACCATCTTGGGTCCTTTGTCGTTGTCCTGTTCGCAGCAGCATCAAGTCCATGCATGCACGCCCTGCCAAGCCAGGCGGCCCTGGCCGCTGTGTGTGAGCGTCTCCATCACTTGCTCCTGCATTGCTTGTCTGCTTCTCCATGGTGTGTCATTGTTGATGTTGTTGCTGTGGCTTGATCAACTAAACCCAAAGTTCCCCATGCCCTACTCCCCAGAGGCCTTCTTGTGACTGCTGCTCTAGCCCGTGTTCCTAGAGGCCAGCCTCCGGATGTATTCTCAACTCTACACTGATGGCTACTGCCTGTGTATGGTGCCCGGCAAGCTCTGCCGTCTGCCTGCTTGTTACTGCTTGGAGCTGGCCAGAAGGCATCACTCACCTTTGGTCATGTGGAGATGGCTCTTGCCCATAGTGGCCCTGCTTCTCTCTTGCCGCCTGGACATGGCTGGAGCCACTAGGGACAGAGGGGAGCAGGCCGCTTTCAGCCAGAGCCTGCTTTTCTAGAAACTGAAGCCTTTAGGGTGGCCCACTGGGTATTGGCTCATCGCCCAGGCTGCCTGTAGGGAGAATATGAACTTGCTTCCCAATCAGTGCCTCAGATTGAGATTGAGGTGTCTGGGGTGCAGAGGTTTCACCCCTGCTGTCCTTAGAATCCAGAGTTCACAACTCAGGTGTACATACCCCAAAGAAGTTGAGTCAGGAAAGTGTCTGTTCTTTTTTTTTAAGTGTTTGTGTGACCAAACTCCAGCCCCGACAAGGCATCGTGAATGCTCAAGAGCCCTGCCGCTGAGAAAGCCTGTGCTGTTCTCTGCTCTGTGCCCAGTGCAGAAAGGCTGGCTGCCCTCTCTTGGGTGCCTCCGCCTGCCCTCTTCTCCCCACTGCAGTCTGTGAAAGGCAGCATGCAGTGGGAGGGAACAGAGTGCTGGGAAGAGGGTGCTCTGACAGCCGTCACCCTGCCCACAGAACTGGACCAGCACGTGGAACGCCCTGTGAGCAGGCTCTTGTGACCCATGACGGCTCAGTAGAAGGAACTGGAACTAGATAGCTGCTGTGTCTGTGTGTGGACCTTGTGCATTCAGAGTTTTCTCCTACTCTCTTTTCTAGCCCTCGAGTAACGGAGAGTTCATGCGCTCCTCCTTCCTTTGCAG
Seq C2 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGAAGCCATTCACCCTATGCCTTGGAGAGGACCACTCATGGCAGCTCTGACGGTTCTGAAACTACCAGTAAGAAAACAGAGAAAGAGGTTTCTTTGGCTGCCCAGAGGGCTGGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.637 A=NA C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]