BtaINT0118604 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101625685-101629223:+
Coord C1 exon
chr11:101625685-101627751
Coord A exon
chr11:101627752-101629026
Coord C2 exon
chr11:101629027-101629223
Length
1275 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
AGATCCTCCTTCCTCTCTAGGTC
3' ss Score
11.05
Exon sequences
Seq C1 exon
GAGTGAAAGCTCTTACTCTGCCTCCCCCGGAAGGTCAGGGGGCGTGAGTGCCCAGCGCGAGCTCCTTGAGGAGAGAGGGCAGGAGTACTTGAGCGCTTCTGACAAGAAGGCCCCAGCAGACTGTGACTCCCGTGTCTCCTCTCAGAGAGTAGGCCAGGAGCTTTTGTTTCCACCCCAAGAAAATGGGCAGGAAGCAGGCACTCCTGGGAGTCACACCCCAAACCTCAGGTGCTCCCCACTGGAGCCCGACTTTGCCCCCACGGAGAAAAAGCTCGAGTATGGTGACTGGGATGTGAACCACCAGTCAAAGGTTGCCAACCCAGACGCTGCGGTTGAGAAGGAGGTACCGCGGGAGGAGCCACCCTTCAGCGTCTCCTCCTGGGAGAAGGAAGGGAGCCCGAGCAAGCCGCCGGCTCTGGAGCCCGAGTGGACGCCAGAAGCCCGGGGCACTGGCAGCCAGCACCCGGAGCAGACCAGCAGGACCCGTAGGTCCGGCCCCATCAAGAAACCTGTCCTGAAGGCCCTCAAGGTGGAGGACAAGGAGAAGGAGCTCGAGAAAGTAAAGCCGGAGCTGGCAGAGGGCAGCACCCGCCTGGCCCGGGAGCCAGGGCCTGTCCATGAAGTGGCTGAGGACGAGGACCAAGAGAACGACCCCGCACTGGCCAATGCGGCCCCGGCCACCTCGGAGGACCAGGGCTTAGCCCGTGCCAGCTTGGGCCGTGAGGCCAGCCGTCCTGAGGAGGACAACAAGCCGGATGGGGCCCCGGAGGCCAGACCCTCCAGGGAGGCCAGCCACACACCCCCGACCAAGAGGAATAACTGGATCTTTATTGATGAGGAGCAAGCCTTTGGGGGCCGGGGGCCAGCCCGGGGCCGAGGCCGCGGGTTCCGAGAGTTCACCTTCCGCGGGCGGCCCACCGGTAGTGGCCTGTGTGGCGGGGGCGTCCTTGGGGCACGCGGCCTCTACAGCGGCAGCCAGAGGAGTAGCCGGGGCCGGGGGCCGCGGGAGTTTGGGCCGCCGGATGACTTCCCCCGGGCCAAGCCCCGGCGGAGGATTGCCAGTGAGACCCACAGCGAGGGCTCTGAGTATGAGGAGCTCCCCAAGCGGCGGCGGCAGCGAGGCACTGAGCCTGGGGATGAGGGTGCGCTCCCGGAGCGGGAGGAGGCCACGGGAAGGAAGGGCGACTTCAGGGAGTCCTGGCGGTCCGGCAGGATGCACCCTGAGGACCATGGTGGGCCTGAGGCCAAGAACCGAGGTCCCCGGGCCTTCGGGCGTGCCCTGCCCCCGCGTCTGAGCAACTGTGCATATGGCCGGAGAACCTTCGCGGCCAAGGAGGTGGCCCCTTGGCCCAGCCGGGGTCCTGGCGCCTCCTGGCAGGAGTCTGGCGCCTCTGACGCATGTGGAGCCCGGCGGCCCTTAGACAGAGACTACATCCCAGACGCCTACAGACGCCCCGACGCCTTGGGCTCCCGGGGCTTCGAGGATGGCCGCCTGGAGGACCGGAGGGCCTTCTTCCAAGATGACCACGCCGCAGAGTCCGAAAACGCAGAGAACCGGCCCTTCCGGCGAAGGCGGCCTCCGCGCCAGGACAAGCCGCCCCGCTTCCGGCGCCTCCGGCAGGAACGGGAGGCCCTGGGCCTGTGGGGGCCGGAGGACGAGCCACCTCTGGCAGCCGGCCAGTGGCCAGGCCGTCCTAGACCCTGCCCCGGGGACAGGAGCAGCGCCTCAGGCCGCAGGTCCCCTGAGCTCGCCTATCAGAACTCCTCCGACCACGCCAACGAGGAGTGGGAGACGGCCTCCGAGAGCAGTGACTTCAGCGAGAGGCGGGAGCGGCGGGCCGGCTCCGAGCTGGACCCCCAGGCTGATGGCAGCCCCTCTGGGGTGAGCGCAGGCGAGAAGAAGGAGCTGGCCAAGCGGAGCTTCTCGGGCCAGAGACCCCTGGTGGACAGGCAGAGCCGGAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGTCTGTTAGGCCAGGTGGCGGTGACACTTCTCCCCGCTATGAGAGTCATCAGAACGGGACGCCTCTGAAAGCCAAAAG
Seq A exon
GTAAACCAGAAGCAGAGTCCCGGGTTCTTTTTTATTGTTATGCTTCTGTTAGCCGGTGTTTCCGGCAGCACCTCACGCATGCTGTCCCGCCGTATGTCAGGGCCCCGACTCCTTCCCCCTCGTTGTGTTCCAGGGTGACTGCCAGGGTGTGTGAGCACCTCCGTCATTGGCTCTCACCCTGCTGTCTGCTTCTCTTGTGCTGTGTTGTTGTTGCTTCAGAACCAAGACTAGAGGCCCCATCCAGTAGTCCCCTGCAGTGGCTGTCCCAGTACCACTCCATGGTTCAATCTCCTTATGTTTCCTTGGAGTCCACCCAAGGGGCCACCAGCACAGGGTTGGGATCACTCCCTGTGTGTGGCACCTGGTGAGCACTGGTCTGTTCCCCAGACTCCTCGGCCCCCGAGTGTGTGCCAGGCAGTTTCTTCGCTGGGGCACTGCTGGCCTCCTGGCCCTGCAGAGAGATCTTCCCTGAGTGCCTTTGCTTTTCCACAAAAGACAAGCAACCCTATCCCAGGGATTACCCCCCACACTTGATGATAGCCAGGTAGCAAGCAGGGGCTGTGAGTGACTCCCAAGGCCCAAAGGGCACCTCTCCGGACTCGGAGGCGTTGGGGTGGGTATCCTGTGCTCAGTGTCTGCTTGCTGCCCACAGCTGGCCTGGGATCAGGGTAGGGGCAGAGCCTGTGCAACCTGCATCCCTGATGTGGCTCCGGCTCCGCCCAGGTGCCAAGGAAGACAATTATCCCGCCTCCCGGCCGCCTCAAGAGTTCAGGGCACATAGGCTTGGCCTGTAGTTCACTCGTATCTCTGAACAAGGCGCCACAGGAGAATGTGGATTCTTGTCAGTGTGGGTCTAGAGGAGCTTTCTAGGCCCCAGATGCCAAGACCTGGCTTTCCTTCTGGTTTCTGCCCCAGAGGACTGGCAGTGGAGCGAGGCCTGGGCTCCCTCTGCAGCCCAGTTCTAAGCCTTGCCCCTTATCTCTTTTCTGGAGCCCTACAGGGTATGGTAGGCAAAGGGAAAGGACAGGAGTACTAGCTGGGGGAGGGGGTGAGCACAGAGCAGCTTTCCCAGGTGCTTTGCTGGAGCAGTGGTCTGGGGCAGCCTCCCCACGGGCTCGCGACAGCGTGTAACCAGCCACCCCTTCTGCTGGGTCGAGGGGACAGCAGGAGGAAATGACGGGAGATGAGGGCTGAGCTTGGTTGTGTGCTGGGCATGTATGTGGTTTCTCCTTCTTGGGCCACTTCTGAGCTGATGAGATCCTCCTTCCTCTCTAG
Seq C2 exon
GTCCCCAGACGAGGCCTTGCCTGGAGGTCTTGGCTGCGGCAGTGGGAGCGGCCATTACACGCTGGAGCGGGCAGCCCATGCTGCCTCTGACGTCACCGAAGCCTCCTGTGAGAAGGTAGAGAAGGAGGCCAAGCTGGCCGCCCAGAGGTCAGGCGAGCAGGGAGAGACCATGAAACCATTTGACCTGAACTACGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAAGGAGCTGGCCAAG
R:
GGTTTCATGGTCTCTCCCTGC
Band lengths:
350-1625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development