HsaINT0016674 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:134349841-134353336:+
Coord C1 exon
chr9:134349841-134351922
Coord A exon
chr9:134351923-134353130
Coord C2 exon
chr9:134353131-134353336
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AGATCCTCTTTCCCTTACAGATC
3' ss Score
11.4
Exon sequences
Seq C1 exon
GAATGAAAGCTCTTTCTCTGCCTCACTCGGAAGGGCAGGGGGCGTAAGTGCTCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTACTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTGTTTCCACCCCAAGAAAATGTTCAGGATGCAGGTGCTCCTGGGGGTCACACCCAAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCAGATGAGAAAAAGCCAGAGTGTGGCAGTTGGGATGTTAGCCACCAGCCAGAGACCGCTGACACAGCCCATGGTGTTGAGCGGGAGACACCCCGGGAGGGGACGGCCTTTAACATCTCCTCCTGGGACAAGAACGGGAGCCCCAACAAACAGCCATCCTCGGAGCCTGAATGGACTCCCGAGCCCCGGAGCTCCAGCAGCCAGCACCCGGAGCAGACGGGCAGGACCCGGAGGTCGGGACCCATCAAGAAACCAGTCCTGAAAGCCCTCAAGGTGGAAGACAAGGAGAAGGAGCTTGAGAAGATTAAGCAGGAGCTAGGGGAGGAGAGTACCCGGCTGGCCAAGGAGAAGGAGCAGAGCCCCACGGCAGAAAAGGATGAGGACGAAGAGAACGATGCCTCTCTGGCCAACTCCTCCACCACCACTTTGGAGGACAAAGGCCCTGGCCATGCCACTTTTGGCCGCGAGGCCACCAAATTTGAAGAGGAGGAGAAACCTGACAAGGCCTGGGAAGCCAGACCCCCACGAGAGTCCAGCGATGTTCCCCCCATGAAGAGAAATAACTGGATCTTTATTGATGAGGAGCAAGCCTTTGGGGTCAGAGGACAGGCCCGGGGCCGGGGCCGTGGTTTCAGAGAGTTCACTTTTCGTGGTCGGCCTGCTGGCGGAAATGGGAGCGGCCTCTGTGGTGGGGGGGTCCTGGGGGCCCGCAGCATCTACTGCAGCAGTCAGCGCAGCGGCCGTGGCCGGGGCCTGCGAGAGTTTGCGCGGCCAGAGGACTGCCCCAGAGCCAAGCCCCGACGGAGAGTTGCCAGTGAGACCCATAGCGAGGGCTCAGAGTATGAAGAACTTCCCAAGCGCCGCCGGCAGAGGGGCTCCGAGAACGGGAATGAAGGCTCGCTCCTGGAGAGGGAGGAGAGCACCTTGAAGAAGGGCGACTGCAGAGATTCTTGGCGGTCCAACAAGGGGTGCTCTGAGGACCACAGCGGTCTAGATGCCAAGAGCCGAGGCCCTCGGGCCTTTGGGCGAGCCCTCCCTCCCCGGCTGAGCAATTGCGGGTATGGACGGAGAACCTTCGTCTCCAAAGAGTCACCCCACTGGCAGAGCAAAAGTCCAGGCAGCTCTTGGCAGGAATATGGCCCTTCCGACACATGCGGATCCCGGCGACCTACAGACAGAGACTATGTCCCAGATTCCTACAGACACCCTGACGCATTTGGTGGCCGGGGCTTTGAGGACAGCCGCGCGGAGGACAAGAGATCCTTCTTCCAAGATGAACACGTGGCAGATTCTGAAAATGCAGAGAACCGGCCCTTCAGGAGAAGGCGCCCCCCACGCCAAGATAAGCCCCCTCGATTCCGGCGCCTCCGGCAAGAGCGGGAGTCCCTGGGCCTGTGGGGACCCGAGGAGGAGCCCCACCTGCTGGCAGGTCAGTGGCCAGGCAGGCCCAAACTGTGTTCTGGGGACAAGAGTGGCACTGTGGGCCGCAGGTCCCCTGAGCTCTCCTACCAGAACTCCTCCGATCACGCCAATGAGGAGTGGGAGACGGCCTCCGAAAGCAGCGACTTCAGCGAGCGGCGGGAGCGGCGGGAAGGCCCTGGGTCCGAGCCCGACTCCCAGGTGGATGGTGGCCTGTCGGGGGCTAGTTTGGGTGAGAAGAAGGAGCTGGCCAAGAGGAGCTTCTCCAGTCAGAGACCCGTGGTTGACAGACAGAGCCGAAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCCGTTAGGCCAGGTGGTGGTGACACCTCCCCTCGCTATGAGAGCCAACAGAATGGGACGCCTTTGAAAGTGAAAAG
Seq A exon
GTAAAACCAGACACCATCTGGGCCCTTTTTGTTGTTGTGTTCTGTTCTCAGCAGCACTGAGTTCACGCATGCATGCCGATGCCGCCGTGTGTCGGGGCTGGGGGCCTGCCCCCAGGCCGTCTGTGCGCGTCTCCATTGCCTGCCCCCACATTGCCTGTCTGCTTCTCGTGGTGGTGTTATTGTGGCTAGAGCTCCCACCCCCACCCCCACCCCAGTGGTGCTCTTGAGGCCACTGTCCAGCACCTGACCTGAGAGTCCAGTCATGTGTCCCTGGAGCCCCGCCGAGGGGCCGCTGCAGCGAGGAACGTTGCCTGTGCACAGTGCCAGGTGCCGGTCAGTCCACCAGAGTCCTCTGCTCCGGAGTTGCTGCCAGGCGGCGTCCTAGGGGGCATCGCTGGCCTCGTGGCTGCATGGAAGTGGCTCTTCCTAGATGGTTCTGCTTCTCCACTGTGAGGAGACGTGGCCCCACGGTGGGGTTGCCACCTCAGCATGGCAGGAGCCCAGCAAACGCAGAGGGGAGCAGGCTGCACATGGTCTGGCGAGCACCTCTTCCACAGCCAGAGGCATTCGGGTGATGACCTCTGCTCAGGGACCAGGAGAGGGTCCCCTGCACAGTCTGGGTTGACTGACTGCACTTGGCTTGTGCCTCGGACAGGGAGGTGCAGGGGCTGCTGAGGCCTTCCCTGTCCTCAGCATACTGAGGAAGATGGCTTCACACCTCCACTCTCCTTAGAATTCAAGGCAGAGAAACTCCCAGAGAAGGAGCCACAGGGAACACCGACTCTTTCAGGTGGCATCTAATCCAGCTTTCCAGGCGCCAGAGGCTGACCCTTGGCTTCACCTCAGTTTTCTGCCCCAAGGGCCCTCCGGCAGGGCAGTCCTGGAGAGGAGCAGAAATGCTGGCGTCTCCATTCTGAGCATATTCCCCTTGTCTCTCTCCCCCCTACACTCTGAACATAGCATGTGGGAGAGCCCTGGGGAGCCACTTTCCCCAGGAGCAGGCAGAGCCGGTGGGGGCAGCCTTACACGTATGTTTGCACACGGACATGGATGCACTGTGGCCAGCCTGCCGCTCCTCCCCACCCGAGGAGTCAGCTAGAGGAAGTGGGCCTAGATCAGGGTGCCGGGCTTGTGTGCAGGCTGTGTGCACGTGCGGTGTTTTCCCTCCTTCCCCAGCTCTGGTTAACAAGATCCTCTTTCCCTTACAG
Seq C2 exon
ATCCCCAGACGAGGCCTTGCCTGGAGGTCTTAGTGGCTGCAGCAGTGGGAGTGGCCACTCCCCCTATGCCCTGGAGCGGGCAGCCCATGCCAGTGCTGACCTTCCCGAAGCCTCCAGTAAAAAGGCAGAGAAGGAGGCCAAGTTGGCTGCTCCGAGGGCAGGTGAACAGGGAGAGGCCATGAAACAGTTTGACCTGAACTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
-BAT2L1:NM_013318:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGAGCTGGCCAAGA
R:
TTCATGGCCTCTCCCTGTTCA
Band lengths:
355-1563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)