GgaINT1022705 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6200263-6203350:+
Coord C1 exon
chr17:6200263-6202329
Coord A exon
chr17:6202330-6203150
Coord C2 exon
chr17:6203151-6203350
Length
821 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTTCTCTTCTTACCTTGTAGATC
3' ss Score
11.8
Exon sequences
Seq C1 exon
AAATGGCAGTTCTTACTCTTCCTCTCCCGGAAGGCCAGAGAATCTGAACACCCAGCGAGATCTCTTTGAGGAAAGAGGGGAGGAATACTTGAATGCTTTTGACAAGAAGACCCAAGGAGACTTTGACAGCTGCCTGTCTTCTCAGAGGCTAGGCCAAGATCTCTTATTTCAGCATCAGGAGAGTGTGCAGGAAACCTGTCCTTCCAGCAACCGCCATGCAAACTTGAGATGTTCACCTCTAGAGCCTGACTTTATCCAAGCAGAGAAGAAACCGGAATATAATGGCTGGGATATCAGCCACCATCAGAAACCTTCAGAGCCTGCAGCAGAGATTACTGAAGAAGTTCCGAGAAATGAGCAGTCATTCGCTGCTGACCCATGGAAGAAAGAAGGAGCTAGTAATACCAAACAGCCTGCTGAAGAGACAACAGAGTGGGCCCCTGAAAACCGAAGCACAGGTGTTCAACAGCAGGAGCAAATTGGGAGGACACGGCGATCAGGCCCAATCAAAAAGCCAGTTCTGAAAGCCCTCAAGGTGGAGGAGAAGGAGAAGGAGATGGAGAAGGTCAAACTGGAGGGAGAGGACACCTCACGCCATCTGAAGGAGAAGGTGACTGTTCAGAAAGTGGAAAACGAATCAGACGACTCTGCAGCCTTACTGAACTCCACACGTTATCTGCTGGATGACAAAGGCTCTTCCCAAGCCAGCCTTGCCCGAGAGGCTGAGAAGTCACAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGATAAGCCAGAAAGAACCTGGGAGAACAAGGTCTCCAGAGAATCCAGTGAGCTTCCTCCCACTAAAAGAAATAACTGGATCTTCATTGATGAAGAGCAAGCCTTTGGTGGGAGAGGTCAAGGGCGTGGGCGAGGGAGAGGCTTCAGAGAATTCACTTTCAGGGGCCGAGGCACTGTTGTGAGCAGTCGGGGAGTCTATAACAACCAGCGGAGCAGCCGAGGGCGAGGGCTCCGGGAGTTCAACCAGCCAGAGGACTTCCCCAGGGGCAAGCCAAGGCGACGGATTGCAAGTGAGACGCATAGCGAAGGGTCAGAATATGAGGAACTCCCCAAACGTCGCCGGCAGAGGGGCTCAGAAAACAGCAATGATGGCTCTGTGCTGGACAGAGAGGACAGTGATTTGAAGAAGGGAGACTTCAAAGAGTCTTGGAGGTCCAACAAAATCTATTCAGATGATCACACTAGTCTCGACCCTAAGATGAGGGCCCCAAGAGCTTTTGGGAGATCACTGCCACCAAGACTAAGCAACTCTGGCTATGGGCGAAGAGGTTTCATGGGCAAGGAGCCAACCCAGTGGCAAGGCAGGAGTGGGGGAGCGGGGTGGCAGGAGTACAGCCACACTTCTCCATCAGATGGTTTTGGGAGCCGGCAACAGTCTGACAGAGACTACATTCAGGATTCTTACAAACACGTGGATTCTTTCTCTAGCCGGGTTTTTGATGAGAGCCATTTGGATGACAAGAGGCACTTCTTCCAGGAGGATTACTTAGCAGATCAGGAGAACATAGAGAACAGGCCATTCAGGAGGCGGCGTCCCCCCCGTCAAGACAAGCCCCCACGCTTCAGGCGCCTCCGGCAAGAACGAGAATTGGTTGGGCAGTGGAACCCTGAGGAGGGAGGCCCCAACCTGCTGCCCAGCCAGTGGCCAGGACGGCCCAAGCTGAGCACCGCAGAGAAGAGCAGCATCTCGGGCAGACGGTCTCCTGAGCTATCCTACCAGAACTCCTCAGATCATGCCAACGAGGAGTGGGAGACAGCATCTGAAAGCAGTGACTTCAGTGAGCGTCGGGAGAGGCGAGATGGAGTTTCAGAGAGTGAGGGCCAGCTGGAGAGTGGCCTTGGGAGTGGCAGCTTGGGAGAGAAGAGAGAGCTAGCAAAGAGGAGCTTCTCAAGCCAAAGGCCGCTGGTGGACAGGCAGAACCGCAAGGCTGAGCCAGCAGGGTATGCGGAGCAGTCTGTCCGGACTGTAGGAGCAGCTTCACGATATGAGAGCCAGCAGAATGGGACACTCATAAAAAGCAAAAG
Seq A exon
GTAAAGTTGCTTTCTCATGTGCAAATGTCTGTCATCTGGTATGTGGTTAACAGGTCAGTGGAGAAGGGCTGGCCTGTGAGTAGGGAGCTGTTCACCATATCTCTTTCAGTCTAATGCAGGTGATTTCCGGCACTACTTATCCAAGCTTAATGGGTTTATATTTGCCTGAGCAAATATTTTCATAGACCTTAGCAAGGTCTGGTGTTGAATGGTAAGGCAGTGCTGTGTGTTTGTAAGATGATGGAAGGAGTTCCTGCTGTGAGTACTGTAAGATAACTCTGACACTAAGGATTAAGTACTTTCTCCAAAGTGTCTTGTGAAGGATCTCATGAATCCACCAGCACTGGGAAGAGGATGCTGAGTTAGCTGTACCTTGCTTCTGGGGGGGGAGGCTCAGTATTGCCATCTTCCTTCCATCTATTTCCCTTCCCCTCGCCCTTTACTTGGCATGGAATGTGTGCCTATCACAAAGAAGAACAAGGGAGCTAGTAGGCTGGTGTACTAGGAGGATAGGAGACACTGATTCAGAAGCACAAAGCCCTCCTTGCAGGGACAAGCTAGGATATTGGCTTTGTTGCAGGGGCAGCCTGTTGGTTGAATCATGAGTTCAGGTATTGTTCTGTTTCCAGCCCACTTACCCTGTAGTCCTTGTAATGGACTGTGTGCTCAGAATTAATGTCATCTTCTGTTGAGCAAACAGTGGGGAAGGATGAGGTGTGATTAGAAACCTGGTAAGGAAAATGCAAGTTTGTGGGTTTTTTTTCTTGCTACTCTTCATCTTCTAGGGGCAAACCTGATTCCTTTCTCTTCTTACCTTGTAG
Seq C2 exon
ATCTCCAGAAGAAGGAGGGGGCCTTGGCAACACCAGTGGTGGGAGCAGCCACTCCATTTACAGCCTGGATAGGGCCTCTCTTGCGAACTCAGAGAGTGCTGAAGGGCCGGGTAAAAAGTCAGAGAAGGAGCCAAAGTCTGCTGTGCAGAGAGCAAGCGAAAAGGGAGAGACATTATCACAGTTTGAACTGAATTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=NA C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTGGGAGACAGCATCT
R:
GCTGTAAATGGAGTGGCTGCT
Band lengths:
348-1169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]