GgaINT0123924 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6826349-6830293:+
Coord C1 exon
chr17:6826349-6826568
Coord A exon
chr17:6826569-6830093
Coord C2 exon
chr17:6830094-6830293
Length
3525 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTCTTCTTACCTTGTAGATC
3' ss Score
11.8
Exon sequences
Seq C1 exon
GAATTATGAAGCCCATGATTCAGCAGGACTCCATCGGTGGGAACAGCTGTCGATCTGAAGATCAGAACTGTCAGGCAGGTCAGGTGGAAAGGAAGGCTGCTCCCATGGACCCTGTGCCAGTATGGGGCCAGGAGAGCTATGCATCTCTGCAGAGCAAAGGGTACTCCCTGTCACATCAAAAGCAGTCTGACAACATGACCATGGAGGGGCTGCATGCCAG
Seq A exon
GTGAGTGCAGATCTCCCCCATCCTCACGCATGCTATGGTAGGAGGCTGTGCTGTCGTAAGAGGCCATTTCCCACTGAAAAGCAGGCTTAGAGATGACCTACAAGATGTCAGACAGGCCAGGATACTATTATGGTAGAACCCTTATGTTGTTGAGTTTTTATGTTGTGAAGATGCTTACAGACTGACTTAACTCAGTTTTTCTGGCTGATGCTAGTCCAGACTGACCAGCTTGGAGCCTTGTGGGGCTGTCTGTTCAGTAGGAGTTGCTTGTCATTTACATAGATAGGTTCTGAAAATGATGAGTCAGAAATTCTTGTCATTTCTAGTTTGTCTCCTAATTTTTTTTGGACTTCCTGAATTCAGTTACTTGTTGGGGGCTGCGTTTCCCTTTATTTCTTAAGTTTGCTGCCCAACACAGGAACTGCTTTCTTTATCATTCATTGATTGGACAAACCAGATAGTACAGCCTGGGGCCATAGCAGATCTGGCCTGCATTCAGGTACTTACAGGCTCATTGTCTCATGGTATAGAACAAAACCTAATTTATTTTTTTGTGCCTCTTGTGCTCAACTTGGGCCCTTGGGTGCATGGTGTGCTTTGCGTTAGCTGACTGTTTTGTTTGTTGTTTCCTTCATAGAAATGGCAGTTCTTACTCTTCCTCTCCCGGAAGGCCAGAGAATCTGAACACCCAGCGAGATCTCTTTGAGGAAAGAGGGGAGGAATACTTGAATGCTTTTGACAAGAAGACCCAAGGAGACTTTGACAGCTGCCTGTCTTCTCAGAGGCTAGGCCAAGATCTCTTATTTCAGCATCAGGAGAGTGTGCAGGAAACCTGTCCTTCCAGCAACCGCCATGCAAACTTGAGATGTTCACCTCTAGAGCCTGACTTTATCCAAGCAGAGAAGAAACCGGAATATAATGGCTGGGATATCAGCCACCATCAGAAACCTTCAGAGCCTGCAGCAGAGATTACTGAAGAAGTTCCGAGAAATGAGCAGTCATTCGCTGCTGACCCATGGAAGAAAGAAGGAGCTAGTAATACCAAACAGCCTGCTGAAGAGACAACAGAGTGGGCCCCTGAAAACCGAAGCACAGGTGTTCAACAGCAGGAGCAAATTGGGAGGACACGGCGATCAGGCCCAATCAAAAAGCCAGTTCTGAAAGCCCTCAAGGTGGAGGAGAAGGAGAAGGAGATGGAGAAGGTCAAACTGGAGGGAGAGGACACCTCACGCCATCTGAAGGAGAAGGTGACTGTTCAGAAAGTGGAAAACGAATCAGACGACTCTGCAGCCTTACTGAACTCCACACGTTATCTGCTGGATGACAAAGGCTCTTCCCAAGCCAGCCTTGCCCGAGAGGCTGAGAAGTCACAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGATAAGCCAGAAAGAACCTGGGAGAACAAGGTCTCCAGAGAATCCAGTGAGCTTCCTCCCACTAAAAGAAATAACTGGATCTTCATTGATGAAGAGCAAGCCTTTGGTGGGAGAGGTCAAGGGCGTGGGCGAGGGAGAGGCTTCAGAGAATTCACTTTCAGGGGCCGAGGCACTGTTGTGAGCAGTCGGGGAGTCTATAACAACCAGCGGAGCAGCCGAGGGCGAGGGCTCCGGGAGTTCAACCAGCCAGAGGACTTCCCCAGGGGCAAGCCAAGGCGACGGATTGCAAGTGAGACGCATAGCGAAGGGTCAGAATATGAGGAACTCCCCAAACGTCGCCGGCAGAGGGGCTCAGAAAACAGCAATGATGGCTCTGTGCTGGACAGAGAGGACAGTGATTTGAAGAAGGGAGACTTCAAAGAGTCTTGGAGGTCCAACAAAATCTATTCAGATGATCACACTAGTCTCGACCCTAAGATGAGGGCCCCAAGAGCTTTTGGGAGATCACTGCCACCAAGACTAAGCAACTCTGGCTATGGGCGAAGAGGTTTCATGGGCAAGGAGCCAACCCAGTGGCAAGGCAGGAGTGGGGGAGCGGGGTGGCAGGAGTACAGCCACACTTCTCCATCAGATGGTTTTGGGAGCCGGCAACAGTCTGACAGAGACTACATTCAGGATTCTTACAAACACGTGGATTCTTTCTCTAGCCGGGTTTTTGATGAGAGCCATTTGGATGACAAGAGGCACTTCTTCCAGGAGGATTACTTAGCAGATCAGGAGAACATAGAGAACAGGCCATTCAGGAGGCGGCGTCCCCCCCGTCAAGACAAGCCCCCACGCTTCAGGCGCCTCCGGCAAGAACGAGAATTGGTTGGGCAGTGGAACCCTGAGGAGGGAGGCCCCAACCTGCTGCCCAGCCAGTGGCCAGGACGGCCCAAGCTGAGCACCGCAGAGAAGAGCAGCATCTCGGGCAGACGGTCTCCTGAGCTATCCTACCAGAACTCCTCAGATCATGCCAACGAGGAGTGGGAGACAGCATCTGAAAGCAGTGACTTCAGTGAGCGTCGGGAGAGGCGAGATGGAGTTTCAGAGAGTGAGGGCCAGCTGGAGAGTGGCCTTGGGAGTGGCAGCTTGGGAGAGAAGAGAGAGCTAGCAAAGAGGAGCTTCTCAAGCCAAAGGCCGCTGGTGGACAGGCAGAACCGCAAGGCTGAGCCAGCAGGGTATGCGGAGCAGTCTGTCCGGACTGTAGGAGCAGCTTCACGATATGAGAGCCAGCAGAATGGGACACTCATAAAAAGCAAAAGGTAAAGTTGCTTTCTCATGTGCAAATGTCTGTCATCTGGTATGTGGTTAACAGGTCAGTGGAGAAGGGCTGGCCTGTGAGTAGGGAGCTGTTCACCATATCTCTTTCAGTCTAATGCAGGTGATTTCCGGCACTACTTATCCAAGCTTAATGGGTTTATATTTGCCTGAGCAAATATTTTCATAGACCTTAGCAAGGTCTGGTGTTGAATGGTAAGGCAGTGCTGTGTGTTTGTAAGATGATGGAAGGAGTTCCTGCTGTGAGTACTGTAAGATAACTCTGACACTAAGGATTAAGTACTTTCTCCAAAGTGTCTTGTGAAGGATCTCATGAATCCACCAGCACTGGGAAGAGGATGCTGAGTTAGCTGTACCTTGCTTCTGGGGGGGGAGGCTCAGTATTGCCATCTTCCTTCCATCTATTTCCCTTCCCCTCGCCCTTTACTTGGCATGGAATGTGTGCCTATCACAAAGAAGAACAAGGGAGCTAGTAGGCTGGTGTACTAGGAGGATAGGAGACACTGATTCAGAAGCACAAAGCCCTCCTTGCAGGGACAAGCTAGGATATTGGCTTTGTTGCAGGGGCAGCCTGTTGGTTGAATCATGAGTTCAGGTATTGTTCTGTTTCCAGCCCACTTACCCTGTAGTCCTTGTAATGGACTGTGTGCTCAGAATTAATGTCATCTTCTGTTGAGCAAACAGTGGGGAAGGATGAGGTGTGATTAGAAACCTGGTAAGGAAAATGCAAGTTTGTGGGTTTTTTTTCTTGCTACTCTTCATCTTCTAGGGGCAAACCTGATTCCTTTCTCTTCTTACCTTGTAG
Seq C2 exon
ATCTCCAGAAGAAGGAGGGGGCCTTGGCAACACCAGTGGTGGGAGCAGCCACTCCATTTACAGCCTGGATAGGGCCTCTCTTGCGAACTCAGAGAGTGCTGAAGGGCCGGGTAAAAAGTCAGAGAAGGAGCCAAAGTCTGCTGTGCAGAGAGCAAGCGAAAAGGGAGAGACATTATCACAGTTTGAACTGAATTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]