MmuINT0023973 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:32067595-32071753:+
Coord C1 exon
chr2:32067595-32067811
Coord A exon
chr2:32067812-32071565
Coord C2 exon
chr2:32071566-32071753
Length
3754 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACTCTTCCTTCCTTTGCAGGTC
3' ss Score
13.01
Exon sequences
Seq C1 exon
GACTGATGAAGCCCATGATGCCCCAAGAGTCCCTCAGTGGGACTGGCTGTCGCTCTGAAGATCAAAACTGTGTGCCCTCGCTCCAAGAACGGAAAGTGACCGCCCTCGACCCAGCTCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAACAAAGGCTACTCACTGCCCCACCCGAAGTCTGCTGACACTCTGGCCATGGGCATGCATGTCAG
Seq A exon
GTGAGCTTCCCTCTGCGGCTGAAGGAAGGCTCCGCAGTCCCAGTGGAGGGCCCTAGGAAGAGGCCCCGTCCCGGGAGACACAGCCCAGGGTGGGTGGGGAGGAGTGGAAGCAGGTGTGCTTGAATGTTTGATGCGAGTGGCTCTCTCTGATGGCCAGGCTGAGGCACAGGAGGAACCCCGTGGTCGTCGAACTGTGGGCATGGAGTAAAGGGGCAGAGGGTGGGCTCACAGGCCGGTGGGTCAAGAGTGGGGTCTGGGCTCGCTCCTCCTGTGCGTATAGGAGCTAGCCCTGCCACCCCAGGCCCAGGCTCCCCACTCCCAGGCTCCAGCTTGTTCATTGCTCCAGGGGACCGCCAGCTCCTCTGTCTCCAGGGCAGTTCATTGAGCTCCACTGACATCTTCACGGCCACGGACGCCAGGGGCCACCGAGCAACGAACCATAAGCTAGACCAAATGTTTGTGTTTTCTTTTCTTTTTAAAAAACTTTTTTTTTCTTTAAAACCAAACCAAACAAACCAAAACTAAGCCCTGTTCAGCATGGCGGCCAGGAACCAAGCTCCAATCACATTGACTGATTTTTCTGGTTCCTTTTCAGGAATGAAAGGTCTTACTGTGCCTCCCCCGGAAGGCCAGGGGGCATAAGTGCCCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTTCTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTATTTCCACCCCAGGAAAATGTTCAGGAGGTGGGTGCTCCTGGGGGTTGTACCCCAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCAGCTGAGAAAAAGCCAGAGTATGGCAGCTGGGATGTTGGCCACCAGCCAAAGGCCGCCGACACAGCCAACGGTGTCGAGCTGGAGGCTCCCCGACAGGAGCCTTCCTTTCATGTTTCCTCTTGGGAGAAGGAAGGGAGCCCCAAGAAACAGCCAAACCCGGAGCCTGAGTGGACACCTGAGCCCCGGAGCTCCAGCGGCCAGCACCAGGAGCAGCCGGGCAGGACCCGGAGGTCAGGACCCATCAAGAAACCAGTTCTTAAGGCCCTGAAGGTAGAAGAGAAGGAGAAGGCCCTGGAGAGAGGCAGGCAGGGGCTTAGAGAGGAGAGCTCACAGCGGGCCCCAGAGAAAGAACCCGTGGGCAGGGCCGAGGAGGACGAAGAGAACAACCCTGCCCTAGCCAATGCCTCCTCCGCCCTGGAGGACAAGGCTGCCTCCCGGGCTGGTTTTGCCCACGAGGCTAGCAAGCTGGATGAAGATGAAAAGGCAGATAAGACCTGGGAGAGCAGGCCCTCAAGGGAGGCCAGTGACATTCCCCCAACCAAGAGAAACAACTGGATCTTCATTGATGAGGAACAGGCCTTTGGGGGACGGGGCCAGGCCCGTAGCCGTGGCCGCGGCTTCAGAGAGTTCACCTTCCGGGGCGGCCGGCCTGCAGGCAGCAGCACAAGTGGTCTTTGTGGCACGGGTGTCCTTGGGTCTCGTGGCATGTACAGTAGTGGCCAGCGCAGTAACCGAGGCAGGGGCCTGCGTGACTTCCCCCCACCAGAAGACTGCCCCAGAGCCAAGCCAAGGCGTCGCATTGCCAGCGAGACTCACAGCGAGGGCTCTGAGTATGAAGAGCTGCCCAAGAGGCGCCGGCAGCGGGGCTCTGAGCATAGCCACGAGGGCATGCTCACGGAGAGGGACGAGGGTGCCCTGAAGGACTCATGGCGCTCCAACAGAACTTACACCGAGGACCAGGGCGGTATAGACACCCGCAGCCGGGGATCCCGGACATGCGGGAGAGCCCTCCCACCCCGCCTGAGCAACTGCAGCTATGGCCGCAGAACCTTTGTTGCCAAAGAACCTCCCCACTGGCAGAGCAGGAGCCCAGGCAGCTCCTGGCAGGAATATGGCTCCTCTGACCCGTGTGGCCCACGGCGAGGCACCGACAGAGACTACATACCAGACTCCTACCGACAATCTGACACATTTGGAAGCAGGCTTTTTGAGGACAGCCGCACGGAGGACAAGAGGTCCTTTTTCCAAGATGACCATGGGGCAGATTCTGAAAATGCAGAAAACAGGCCCTTCCGTAGGAGGCGGCCCCCACGCCAAGACAAGCCCCCTCGCTTCCGGCGCCTCCGTCAAGAGCGGGAGTCCCTGGGCCTGTGGGGACCTGAGGAGGAGTCCCATCTGCTGGCAAGCCAGTGGCCAGGCCGGTCCAAACTCTGTCCTGGGGACAAGAGTGGTCCTGGAGGTCACAGATCCCCAGAGCTTTCCTACCAGAATTCCTCTGATCATGCCAACGAGGAGTGGGAGACCGCCTCCGAGAGTAGTGACTTCAGCGAGCGTAGGGAGCGGCGAGAAGGCCTCGTGGCTGAACCCGAAGCGCAAGGGGATGGTGGCCTCTCTGGGTCCAGTTTGGGTGAAAAGAAGGAGCTGGCCAAGAGGAGCTTCTCCAGCCAGAGGCCCCTGGCCGACAGACAGAGCCGCAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCTGTTAGGCCAGGTGGGGGTGAGCCTTCCCCCCGCTGCGAGAGCCAGCAGAGCGGGACGCCTCTGAAAGTCAAAAGGTAACGCGTCAGCACCATCGCGGGTCCTTTGTCGTTGTCCTGTTCGCAACAGCATCAAGTCCATGCATGCACGCCCTGCCAAGCCAGGCGGCCCCGGCCGCTGTGTGTGAGCATCTCCATCACGTGCTCCTGCATTGCTTGTCTGCTTCTCCATGGTGTGTCATTGTTGATGTTGTTGTTGTGGCTTGATCAACTAGACCCAGAGTTCCCCATGCCCTACTCCCCGGAGGCCTTCTTGTGACTGCTGTTCTAGCCCGTGTTCCCAGAGTCCAACCTCCGGATATATCCTCAGCTCTGCCCTGACGGCTGTTGCCTGTGTGTGGTGCCCGACAAGCTCTGCAGTCTACCCGCTTGGTACTGCTGCAGCTGGTCAGAAGGCAACACTCACTTTTGGTCATGTGGAGAAAGCTCTTGCCCCTAGTGGCCCTGCTTCCCTCGTGCTGCCTGGACATGGCTGGAGCCACCAGGAACAGAAGGGAGCAGCCCGCTCTCAGCCAGAGCCTGCTTTTCTAGAAGCTGAAGCTTATGGGGTGGCCCATGGCCCAGGCTGCCTGTAGGGAGAATGTGGTCCTGCTGCCCAATCAGCGCCTCAGGTTGAGATGTCTGGGGTGCAGAGGTTTTACCCCTCCTGTCCTTAGAATTCAGAGTTCACAACTCACGTGTACATACCCCAAAGAAGTTGACTCAGGAGAATATCTGTTAAGTCTCGGTGTGACTATACTGCAGCCCCAACAAGGCATCATGAATGAACTCAAGAGCCCTGCAGTGAGATAGCCTGTGCTGCTCTGGTCTGTGGGCCTCTCTTGGGTGCCTCCACCCGGCCTCTTCTCGGCACTGCAGTCTGTGGAAGCAGCATACAGTGGGAGGGAAGAGTACTGTGGAGAGGGTACTCCAGCAGCCTTCACCCTGCCGCAGAACAGGACCAGCACGGGGCTCGCACTGTGGGCAGGCTCTTGTGACCCTTGATGGCTCAGTCGCAGGAACCGGAACTAGATAGCTGCTGTGTCTGTGTGTGGGCCTCGTGCATTCAGATCCTCCTGCCCCTCTTTCCTAGCCTTTGAGTAGTGGAGCGTTCATGGACTCTTCCTTCCTTTGCAG
Seq C2 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGCAGCCATTCACCCTATGCCTTGGAGAGAACCACTCACGCCAGCTCTGACGGTCCTGAAACCCCCAGTAAGAAATCAGAGAGAGAGGTTTCTTTGCCTACCCAGAGGGCTAGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2l:NM_172661:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: