MmuEX6101805 @ mm9
Exon Skipping
Gene
ENSMUSG00000027022 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198]
Coordinates
chr2:67343091-67345237:+
Coord C1 exon
chr2:67343091-67343180
Coord A exon
chr2:67343560-67343632
Coord C2 exon
chr2:67345104-67345237
Length
73 bp
Sequences
Splice sites
3' ss Seq
TAAATTGTCTTTAAACACAGATG
3' ss Score
5.28
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGGCAATCCACAGCAGTCAAGAAATAATAAGAAGGAATGAACAAGAAGTTTCTAAAGGACATGGAACTGATGTCTTCAAAGCAGAAATG
Seq A exon
ATGTCACATCTTGAAAAGCACACTGAGGAAACAAAGCAAGCTTCACAGTTTCATCAATATGTTCAAGAAACAG
Seq C2 exon
TCATTGATTCGCCAGAAGAAGAAGAGCTTCCTAAGGTTTCCACTAAGATTTTAAAAGAGCAATTTGAAAAGTCTGCCCAGGAAAACTTCCTCCGCTCTGATAAAGAAACATCACCCCCAGCCAAGTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027022-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.893 C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAATCCACAGCAGTCAAG
R:
CCTGGGCAGACTTTTCAAATTGC
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: