HsaEX6016448 @ hg19
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:14303]
Coordinates
chr2:168096365-168098420:+
Coord C1 exon
chr2:168096365-168096475
Coord A exon
chr2:168097174-168097246
Coord C2 exon
chr2:168098287-168098420
Length
73 bp
Sequences
Splice sites
3' ss Seq
CAAATTCTCTTTAAATACAGGTC
3' ss Score
6.18
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAGGCAATTCATAGCAGCCAGGTTGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAATTGATGTTCATGGAACAGAAATG
Seq A exon
GTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTCATCAATATGTTCAAGAAACTG
Seq C2 exon
TCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACTAAGTTGTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAACCCCAGCCAAGCAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.782 C2=0.543
Domain overlap (PFAM):
C1:
NO
A:
PF0231811=FYVE_2=PU(15.7=72.0)
C2:
PF0231811=FYVE_2=FE(38.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCACTTCAAGAAGCAGC
R:
TGGGCAGACTTTTCAAACTGCT
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)