BtaEX6009320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017743 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:29098839-29100463:-
Coord C1 exon
chr2:29100398-29100463
Coord A exon
chr2:29099907-29099979
Coord C2 exon
chr2:29098839-29098969
Length
73 bp
Sequences
Splice sites
3' ss Seq
AAAATTATCTTTAAACATAGGTC
3' ss Score
5.18
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAATGGAAAGAAATGAACCAGAAATTTCCGAAGCACACAAAATTGATGTTCTTGGAACAGAAATG
Seq A exon
GTCTCTCATCTTGAAAAACACACTGAGGAAATAAACCAAGCTTCTAAGCTCCATCAATATGTTCAAGAAACAG
Seq C2 exon
TCATAGATACACCTGAAGATGAAGAGATTCCAAAGGTTTCGACTAAGTTTTTAAAAGAACAATTTGAAAAGTCTGTCCAGGAAAAGGTCCTTTATTCTGACAAAGAATTGACCCCAGCCAAGCAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017743-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAATTTCCGAAGCACACA
R:
GCTTGGCTGGGGTCAATTCTT
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]