HsaEX6016448 @ hg38
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:167239855-167241910:+
Coord C1 exon
chr2:167239855-167239965
Coord A exon
chr2:167240664-167240736
Coord C2 exon
chr2:167241777-167241910
Length
73 bp
Sequences
Splice sites
3' ss Seq
CAAATTCTCTTTAAATACAGGTC
3' ss Score
6.18
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAGGCAATTCATAGCAGCCAGGTTGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAATTGATGTTCATGGAACAGAAATG
Seq A exon
GTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTCATCAATATGTTCAAGAAACTG
Seq C2 exon
TCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACTAAGTTGTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAACCCCAGCCAAGCAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092-'12-24,'12-23,13-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.567
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCACTTCAAGAAGCAGC
R:
TGGGCAGACTTTTCAAACTGCT
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains