RnoEX0099947 @ rn6
Exon Skipping
Gene
ENSRNOG00000034258 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:RGD Symbol;Acc:1302980]
Coordinates
chr3:53630479-53632569:+
Coord C1 exon
chr3:53630479-53630565
Coord A exon
chr3:53630945-53631017
Coord C2 exon
chr3:53632436-53632569
Length
73 bp
Sequences
Splice sites
3' ss Seq
TAAATTGTCTTTAAACACAGATG
3' ss Score
5.28
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GAGGCAATCCACAACAGGCAAGAAATAAGAAGGAATGAAGAAGAAGTTTCTAAAGGACACAGAACTGATGTCTTCAAAGCTGAAATG
Seq A exon
ATGTCACATCTTGAAAAGCACACGGAGGAAACAAACCAAGCTTCACAGTTTCGTCAATATGTTCAAGAAACAG
Seq C2 exon
TCATTGATACACCAGAAGACGAAGAGATTCCTAAGGTTTCCACTAAGATTTTAAAAGAGCAATTTGAAAAGACTGCCCAGGAAAACTTCCTCTACTCTGATAAAGAAACAACAACCCCAGCCAAGTGTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034258-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAATCCACAACAGGCAA
R:
CCTGGGCAGTCTTTTCAAATTGC
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]