DreEX0085629 @ danRer10
Exon Skipping
Gene
ENSDARG00000071113 | xirp2a
Description
xin actin-binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
Coordinates
chr6:9938050-9950936:-
Coord C1 exon
chr6:9950868-9950936
Coord A exon
chr6:9950627-9950693
Coord C2 exon
chr6:9938050-9938183
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGGAGGTGTTTTTATGTTAGGTT
3' ss Score
5.48
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CAGGTGGTGAGCTCATCAGAGGTGACAGTACGAAGCAGTGTTAAAGAAAGCAGTACCTCAAATGCTCAG
Seq A exon
GTTTCTCTGGACAAGAATGTTCAACAGAGTGTGGCCTCCAGTTTTGGCGATCATTATGATGAGAAAG
Seq C2 exon
AAAGTACGGGTGCCAGAGTCCGAACTGTGTCAGGTATGTCGGAAGAGGGTGTATCCCATGGAGTCTCTCATAGCAGACAAGCAAAACTTCCATAAAACCTGTTTTAGATGTGCCCACTGCAACAGCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071113_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=0.239 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACAGTACGAAGCAGTGT
R:
CTGAGCTGGCTGTTGCAGTG
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]