GgaEX6042482 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSM0]
Coordinates
chr7:18886406-18887705:-
Coord C1 exon
chr7:18887638-18887705
Coord A exon
chr7:18887210-18887282
Coord C2 exon
chr7:18886406-18886539
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGCAAAGGTTTTGTGCACAGGTT
3' ss Score
3.88
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCATTAGGAGACATCCAGTATCAATCAGCTTAAAATATCAAACAGCACCAGGGAAGCTGGATGCAATG
Seq A exon
GTTTCTCTTGGGGAGCAAGGAACACCTGAGACAAACCAGGCTTCTACATTTACACAGAGCACTGATGAAACAG
Seq C2 exon
TAACCAGTGCAGTTATGAATGAGGACTTCCCAAAAACTTCTACACAGATTTTAAAACAGCATTTTGAAATGACAGCTCAGGAAAACACTGTACCCTCTGACAGAGAGACTGCAACACCTGCAAAAAATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010933-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.960 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACATCCAGTATCAATCAGCT
R:
GGTGTTGCAGTCTCTCTGTCA
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]