MmuEX6101805 @ mm10
Exon Skipping
Gene
ENSMUSG00000027022 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198]
Coordinates
chr2:67505034-67526614:+
Coord C1 exon
chr2:67505034-67505123
Coord A exon
chr2:67505503-67505575
Coord C2 exon
chr2:67524772-67526614
Length
73 bp
Sequences
Splice sites
3' ss Seq
TAAATTGTCTTTAAACACAGATG
3' ss Score
5.28
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGGCAATCCACAGCAGTCAAGAAATAATAAGAAGGAATGAACAAGAAGTTTCTAAAGGACATGGAACTGATGTCTTCAAAGCAGAAATG
Seq A exon
ATGTCACATCTTGAAAAGCACACTGAGGAAACAAAGCAAGCTTCACAGTTTCATCAATATGTTCAAGAAACAG
Seq C2 exon
CTTGGGAAATTACGCATCACTTCACGGACGAATATACTGCAAGCCTCATTTTAAACAACTTTTTAAGTCTAAAGGAAATTATGATGAAGGGTTTGGACACAAGCAACATAAAGATCGATGGAATTGCAAAAACCAAAGCAGCTTAGTTGATTTTATTCCCAGCGGAGAGCCCGATGCGCATGAAAACCCTACAGCAGATACCCTCTTGCTTGGGGATCTTACTACCCACCCAGATGCTTGTAACAGCAAGCGGCAAGACAATGATTTGAGAAAATGGGGGGACAGGGGGAAATTAAAAATTGTTTGGCCTCCTTGTCAGGAGATGCCTAAGAAAAACTCTCCCCCTGAGGAAGAATTCAAAGTGAATAAAGCTAAGTGGCCGCCTGAAGTGACCATCCCTGTTCCCTCAGATTTTAAAAGGGAGTCGCTGACCGAACATGTGAAGACATTGGAAAGTCAAGGGCAAGAACAAGATAGCGTCCCTGACTTGCAGCCCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027022_MULTIEX1-3/6=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.418
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PD(36.8=4.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGATGTCTTCAAAGCAGA
R:
GCTGCTTTGGTTTTTGCAATTCC
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types