GgaEX6042482 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20859838-20861130:-
Coord C1 exon
chr7:20861023-20861130
Coord A exon
chr7:20860642-20860714
Coord C2 exon
chr7:20859838-20859971
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGCAAAGGTTTTGTGCACAGGTT
3' ss Score
3.88
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGACATCCAGTATCAATCAGCTTAAAATATCAAACAGCACCAGGGAAGCTGGATGCAATGGAATGACCTCCAAGGAAAGTCTAGTGGAAGTGTTTCAACCACAAGAG
Seq A exon
GTTTCTCTTGGGGAGCAAGGAACACCTGAGACAAACCAGGCTTCTACATTTACACAGAGCACTGATGAAACAG
Seq C2 exon
TAACCAGTGCAGTTATGAATGAGGACTTCCCAAAAACTTCTACACAGATTTTAAAACAGCATTTTGAAATGACAGCTCAGGAAAACACTGTACCCTCTGACAGAGAGACTGCAACACCTGCAAAAAATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010933-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=1.000 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCTGGATGCAATGGAA
R:
GGTGTTGCAGTCTCTCTGTCA
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]