MmuEX0041315 @ mm9
Exon Skipping
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73150641-73153582:+
Coord C1 exon
chr2:73150641-73150741
Coord A exon
chr2:73152418-73152510
Coord C2 exon
chr2:73153482-73153582
Length
93 bp
Sequences
Splice sites
3' ss Seq
AATAGAAGTAAACTAAAACTATG
3' ss Score
-23.64
5' ss Seq
AAGAGAATC
5' ss Score
-8.37
Exon sequences
Seq C1 exon
AGAACTTCCGAGGTCGGGAGGATGACTACTTCCGTGGTTTGACGCTTGGCACCGCCCCTCTTGCTCTCTTCCGGCAGTCGCTTCTGGTGGCTGCCGCGGCT
Seq A exon
ATGTCTGTTCTGGAAGCAAAATAAAAATAGGAGATTTTGAATGGTTCTACAAACTGGAATTTAAGATTTTCCAGATCACAGAATCTGGAAAAG
Seq C2 exon
TTTTAAGAAATGGAACCCTATTCCTGTGACACTTTTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226-'0-3,'0-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGTCGGGAGGATGACTAC
R:
ATAACCCTATTTCCTACTGTTGCTGG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: