MmuEX0020070 @ mm9
Exon Skipping
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34576088-34580752:-
Coord C1 exon
chr2:34580563-34580752
Coord A exon
chr2:34578458-34578538
Coord C2 exon
chr2:34576088-34576248
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTAATATTTTTGCAACCCAGGAC
3' ss Score
5.9
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTAAATTTTATGAAGAGTGTGATGTCTGGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACCTGCCCCAGGCTAAGCCAGGGAAGAGCAGCAGTCTGGACATGACTCCCTATAGCACTCCTCAGATGTCTCCAGCAACCACTCCAGCCAACAAGAAGAATCGATTACCTATAG
Seq A exon
GACAACAGTTAGCAGCCATCACTGCCTGGGATTCGTCAGCCACCAATCTTACTGCTCATATTCCTCTAGTAACCCCATTTG
Seq C2 exon
CAACTCGGAGCAGAAGCCGAAGTAATATGTTAATGGACCTACATATGGATCATGAAGGATCATCTCAAGAAACCATCCAGGAGGTACAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGCCCTCAGCTCACTCCAGGGATGATGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=0.107 C2=0.976
Domain overlap (PFAM):
C1:
PF153241=TALPID3=FE(29.7=100)
A:
NO
C2:
PF153241=TALPID3=FE(25.0=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGTCTGGACATGACTC
R:
TCTGGCTGTACCTCCTGGATG
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: