GgaEX0001025 @ galGal4
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9608158-9610710:+
Coord C1 exon
chr17:9608158-9608347
Coord A exon
chr17:9609236-9609316
Coord C2 exon
chr17:9610550-9610710
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTAATGCTTTCGAAATCCAGGAC
3' ss Score
5.17
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTGGTTTCATGCGAAATGTAATGTTGAGTGATCAACTTAAGGAAGATCGGATGGCTTTGGAAAACTTGCTAGCAAACTTACCCCAGAACAAACCAGGGAAGAGTAGCAGCCTTGAAATGACTCCGTATAATACCCCACAGCTCTCTCCTGCTACCACTCCAGCTAACAAAAAAAATCGATTACCCATAG
Seq A exon
GACAGCAATTGGCAGCCATTACTGCCTGGGATACCTCTGCTACCAATCTTTCAGCTCATATAACTCTAGTAACCCCTTTTG
Seq C2 exon
CAACTCGTAGCAGAAGTAGGTCAAATATTCTCATGGATCAGCATGGGGATCATGAAGGATCCTCCCAGGAGACCATCCCAGAAGTTCAGCCAGAAGAAGTGCTGGTGATTTCCCTGGGAGCAGGTCCGCAGATTACTCCAGGAATGATGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.691 A=0.000 C2=0.944
Domain overlap (PFAM):
C1:
PF153241=TALPID3=FE(53.4=100)
A:
NO
C2:
PF153241=TALPID3=FE(44.9=100)
Main Inclusion Isoform:
ENSGALT00000001466fB103
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCCTTGAAATGACTCCG
R:
ACTTCTGGGATGGTCTCCTGG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]