GgaEX0001025 @ galGal3
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10330153-10332705:+
Coord C1 exon
chr17:10330153-10330342
Coord A exon
chr17:10331231-10331311
Coord C2 exon
chr17:10332545-10332705
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTAATGCTTTCGAAATCCAGGAC
3' ss Score
5.17
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTGGTTTCATGCGAAATGTAATGTTGAGTGATCAACTTAAGGAAGATCGGATGGCTTTGGAAAACTTGCTAGCAAACTTACCCCAGAACAAACCAGGGAAGAGTAGCAGCCTTGAAATGACTCCGTATAATACCCCACAGCTCTCTCCTGCTACCACTCCAGCTAACAAAAAAAATCGATTACCCATAG
Seq A exon
GACAGCAATTGGCAGCCATTACTGCCTGGGATACCTCTGCTACCAATCTTTCAGCTCATATAACTCTAGTAACCCCTTTTG
Seq C2 exon
CAACTCGTAGCAGAAGTAGGTCAAATATTCTCATGGATCAGCATGGGGATCATGAAGGATCCTCCCAGGAGACCATCCCAGAAGTTCAGCCAGAAGAAGTGCTGGTGATTTCCCTGGGAGCAGGTCCGCAGATTACTCCAGGAATGATGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.688 A=0.036 C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCCTTGAAATGACTCCG
R:
ACTTCTGGGATGGTCTCCTGG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event