RnoEX0037743 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13791620-13795913:-
Coord C1 exon
chr3:13795724-13795913
Coord A exon
chr3:13794302-13794382
Coord C2 exon
chr3:13791620-13791780
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTAATATTTTTGTAACCCAGGAC
3' ss Score
6.15
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTAAATTTTATGAAGAGTGTGATGTCTGGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACTTGCCCCAGGCTAAGCCCGGGAAGAGCAGCAGTCTAGACATGACTCCCTACAGCACTCCTCAGATGTCTCCAGCAACCACTCCAGCCAATAAAAAGAATCGGCTACCTATAG
Seq A exon
GACAACAGTTAGCAGCCATCACTGCCTGGGATTCTTCAGCCACCAATCTTACCGCTCACATTCCTCTAGTAACCCCGTTTG
Seq C2 exon
CAACTCGGAGCCGAAGCCGAAGTAATATGCTAATGGACCTACATATGGATCATGAAGGGTCATCTCAAGAAACCATCCAGGAGGTGCAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGTCCTCAGCTCACTCCAGGGATGATGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.054 C2=0.884
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGAGCAGCAGTCTAGA
R:
TGCACCTCCTGGATGGTTTCT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]