BtaEX0015351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96174127-96176970:+
Coord C1 exon
chr11:96174127-96174316
Coord A exon
chr11:96175457-96175537
Coord C2 exon
chr11:96176810-96176970
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTAATGCCTTCGCAACCCAGGAC
3' ss Score
5.12
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTGAATTTTATGAAGAGTGTGATGTCTGGAGATCAACTGAGAGAAGATAGAATGGCTCTTGACAACTTACTGGCAAATCTACCCCAGGCAAAGCCGGGAAAAAGCAGCAGTCTGGAAATGACCCCCTACAGTACTCCTCAGCTGTCTCCAGCAGCCACTCCAGCAAATAAAAAGAATCGGTTGCCTATAG
Seq A exon
GACAACAGTTAGCAGCCATCACTGCCTGGGATTCCTCAGCCACCAGTCTTACTGCTCATATTACTCTAGTAACCCCGTTTG
Seq C2 exon
CAACTCGGAGCAGAAGTCGCACGAACGTGCTAATGGACTTGCATATGGACCATGAAGGGTCAGCTCAAGAAACCATCCAGGAGGTGCAGCCGGAAGAGGTGTTGGTCATTTCCTTAGGAACAGGTCCCCAGCTTACTCCAGGGATGATGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.000 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015341fB2928
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTCTGGAAATGACCCC
R:
CTGCACCTCCTGGATGGTTTC
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development