DreEX0034289 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34458583-34464825:-
Coord C1 exon
chr8:34464633-34464825
Coord A exon
chr8:34462465-34462545
Coord C2 exon
chr8:34458583-34458737
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGCTGACAATGATCATCAGGAC
3' ss Score
2.13
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTGGACTTTGTGCGCAGTGTTACAGCAGGCGATCAGCTCAGAGAGGAAGAGCATCTGGCTCTAGAAACTCTTCTTGCTAATGTTCCTCAGTCCCGCACAACAAAGAGCAACAGTCTGGAGCTCACGCCCTCAAACACACCCCAGCTCTCCCCTGCTACTACACCTGCAAACAAGAAGAACAGACTCCCCATTG
Seq A exon
GACAACAGTTGGCAGCCATAACATGTTGGGAGCCCTCTGCCACCTCCCTGTCCGCTCATATACCCTTAGTAACCCCGTTTG
Seq C2 exon
CAGGCTCTCGCAGCCGAAGCCGATCCAACATGGCCCAGGAAGGAGAGACTGAAGCCAGTTCTCAAGAGTCTCTGCAAGAGGTCCCCGAGGAAGTGCTGGTCATCTCTCTAGGAACATCACCACAGACCATTCCCGGGATGATGTCAGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=0.143 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000161282fB2888
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATGTTCCTCAGTCCCGC
R:
TTCAGTCTCTCCTTCCTGGGC
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]