DreALTA0012474-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34458583-34464825:-
Coord C1 exon
chr8:34464633-34464825
Coord A exon
NA
Coord C2 exon
chr8:34458583-34458734
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTATTG
5' ss Score
1.45
3' ss Seq
TTCTCACCCTCACCCAGCAGGCT
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTGGACTTTGTGCGCAGTGTTACAGCAGGCGATCAGCTCAGAGAGGAAGAGCATCTGGCTCTAGAAACTCTTCTTGCTAATGTTCCTCAGTCCCGCACAACAAAGAGCAACAGTCTGGAGCTCACGCCCTCAAACACACCCCAGCTCTCCCCTGCTACTACACCTGCAAACAAGAAGAACAGACTCCCCATTG
Seq A exon
NA
Seq C2 exon
GCTCTCGCAGCCGAAGCCGATCCAACATGGCCCAGGAAGGAGAGACTGAAGCCAGTTCTCAAGAGTCTCTGCAAGAGGTCCCCGAGGAAGTGCTGGTCATCTCTCTAGGAACATCACCACAGACCATTCCCGGGATGATGTCAGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-10-12,10-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAACACACCCCAGCTCTC
R:
CTTCCTGGGCCATGTTGGATC
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]