MmuALTA0004383-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64937215-64940223:-
Coord C1 exon
chr2:64940126-64940223
Coord A exon
chr2:64937447-64937449
Coord C2 exon
chr2:64937215-64937446
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TATTTTTTTTTTCCTCTCAGTAG
3' ss Score
7.27
Exon sequences
Seq C1 exon
AGGGCCGTATCATCCTGTTGTAGGCCATATAGGCAATGAGGACAGAGTATCTGACAGTATAAAAGACATGAAGACACTGGGCCCAAACCAGGAGAGTG
Seq A exon
TAG
Seq C2 exon
TTCAAAATGAAATCATGGTCTGTGCCACAAGCACAGATTATGTGAAAAACAGACCGGGGAAAATGGAAACCACCATAGAAGGCGAAGGCGAAGCTCTGAAGAAAGCCAGCGACATGGAAACTGATAGATTGTCAGGCTCTCCTGCATGTAGAATGGACAATGTTAAAAGTTCGAGGGAAAATCATCTAACAGCATCGCCAGGACCAGATCAAAAATTGAATCAACCAGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-27-26,27-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGACACTGGGCCCAAAC
R:
TGGTGGTTTCCATTTTCCCCG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: