MmuALTA0018344-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25477128-25477525:-
Coord C1 exon
chr2:25477454-25477525
Coord A exon
chr2:25477195-25477275
Coord C2 exon
chr2:25477128-25477194
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
ATCCATTCTCCCTCGCCAAGGCC
3' ss Score
3.38
Exon sequences
Seq C1 exon
GGCAGAACCTGACCAACCATGGTGAATCTGGGCTTGTCCCGTGTGGATGACGCCGTGGCCGCCAGGCACCCG
Seq A exon
GCCAGGTCGTGGCTAAAGGAGAAGCAGGAGGCGAGGAAAGAGAACTGAGCCACGAACACCTTCCCCGCCCCCTAATCCCAG
Seq C2 exon
GGACTCGAGGAATTTGCTGCCTGCCAGTCGCACGCCTTCATGAAGGGCGTTTTCACTTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939-0-4,0-3,0-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(17.0=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACCTGACCAACCATGG
R:
TGTGACAAAAGTGAAAACGCCC
Band lengths:
137-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: