MmuALTA0018344-1/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25477128-25477525:-
Coord C1 exon
chr2:25477454-25477525
Coord A exon
NA
Coord C2 exon
chr2:25477128-25477194
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
TCCCCGCCCCCTAATCCCAGGGA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GGCAGAACCTGACCAACCATGGTGAATCTGGGCTTGTCCCGTGTGGATGACGCCGTGGCCGCCAGGCACCCG
Seq A exon
NA
Seq C2 exon
GGACTCGAGGAATTTGCTGCCTGCCAGTCGCACGCCTTCATGAAGGGCGTTTTCACTTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939-0-4,0-3,0-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(17.0=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(23.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACCTGACCAACCATGG
R:
TGTGACAAAAGTGAAAACGCCC
Band lengths:
137-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: