BtaALTA0030394-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013889 | TMEM141
Description
Bos taurus transmembrane protein 141 (TMEM141), mRNA. [Source:RefSeq mRNA;Acc:NM_001034462]
Coordinates
chr11:106376384-106376837:-
Coord C1 exon
chr11:106376738-106376837
Coord A exon
chr11:106376444-106376450
Coord C2 exon
chr11:106376384-106376443
Length
7 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CAACCCCTTCCCCCTCCCAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGCCGGGTGTAGGTCAGCCCGCCGGCTCCCCGCCGCCGCGCCAGCCATGGTGAACTTGGGCCTGTCCCGGGTGGACGACGCCGTGGCCAGCAAGCACCCG
Seq A exon
GGACTAG
Seq C2 exon
GCGAGTACGCGGCTTGCCAGTCGAACGCTTTCGTGAAGGGCGTTTCCACCTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013889-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100),PF140121=DUF4229=PU(6.8=13.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGAACTTGGGCCTGTC
R:
TGGAAACGCCCTTCACGAAAG
Band lengths:
103-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development