RnoALTA0041029-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000028254 | Tmem141
Description
transmembrane protein 141 [Source:RGD Symbol;Acc:1561492]
Coordinates
chr3:2845223-2845593:-
Coord C1 exon
chr3:2845518-2845593
Coord A exon
NA
Coord C2 exon
chr3:2845223-2845289
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CCCCCACCCTCCAATTCCAGGGA
3' ss Score
9.82
Exon sequences
Seq C1 exon
CCTTGGCGGAACCTGACCAACCATGGTGAATCTGGGCCTGTCCCGTGTAGATGACGCCGTCGCCGCCAAGCACCCG
Seq A exon
NA
Seq C2 exon
GGACTCGAGGAATATGCTGCCTGCCAGTCGAACGCCTTCATGAAAGGCGTTTTCACTTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028254-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCGGAACCTGACCAA
R:
CTGTGACAAAAGTGAAAACGCCT
Band lengths:
143-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]