HsaALTA1064440-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr9:136791355-136791777:+
Coord C1 exon
chr9:136791355-136791424
Coord A exon
NA
Coord C2 exon
chr9:136791711-136791777
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
ACCCGCCTCTGCCACCCCAGGGA
3' ss Score
7.08
Exon sequences
Seq C1 exon
CCGAGCCCTGCCAACCATGGTGAACTTGGGTCTGTCCCGGGTGGACGACGCCGTGGCTGCCAAGCACCCG
Seq A exon
NA
Seq C2 exon
GGACTCGGGGAGTATGCCGCATGCCAGTCACACGCCTTCATGAAGGGCGTTTTCACCTTCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCTGCCAACCATG
R:
TGTGACGAAGGTGAAAACGCC
Band lengths:
135-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains