HsaALTA1064440-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr9:136791355-136791777:+
Coord C1 exon
chr9:136791355-136791424
Coord A exon
chr9:136791626-136791710
Coord C2 exon
chr9:136791711-136791777
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
AGGGTCTCACTCCTCCACAGCCA
3' ss Score
6.19
Exon sequences
Seq C1 exon
CCGAGCCCTGCCAACCATGGTGAACTTGGGTCTGTCCCGGGTGGACGACGCCGTGGCTGCCAAGCACCCG
Seq A exon
CCAGGGTGTGCCCAGAGGAGGGACAGGAGAGGCGGTGAAGGAAGAGGGCAGGGGATCGAGCCTTCACCCGCCTCTGCCACCCCAG
Seq C2 exon
GGACTCGGGGAGTATGCCGCATGCCAGTCACACGCCTTCATGAAGGGCGTTTTCACCTTCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCTGCCAACCATG
R:
TGTGACGAAGGTGAAAACGCC
Band lengths:
135-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains