MmuINT0066467 @ mm9
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31467099-31468078:+
Coord C1 exon
chr2:31467099-31467259
Coord A exon
chr2:31467260-31468004
Coord C2 exon
chr2:31468005-31468078
Length
745 bp
Sequences
Splice sites
5' ss Seq
GGCGTACGT
5' ss Score
6.5
3' ss Seq
GCTGCTCTGTGCCCACACAGGGT
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAGCGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGTGGCCAGGCATCTCATAGATGAGAAAGTTGGC
Seq A exon
GTACGTACACGGGCCTCCCCCCACCTGGCTTATACTAGCTGGATTTGCTTTTGGATGTCCAAGGTACCTGCTTTCCCCCAGAACCTTGTGCTTCCTGTGCCTCTCCATCCTTGCATCGTGTGGGGGCAGCCTCTCCTCCTCTCCAAAGGAAAGTCCAAGGCTCAGGGAGTGCCAGGCCCCAGATGCAATGAGAGAAGCCCCTGGCATGACTGCCAGGGCTTCAGCAGTCAGACCTCCGGCCATGTCCCTGCAGGCGTAAATGAGCTGCAGGAAAGCAGCCTTCCCCCGGCACTGCCCCAGGTTCCCTCAGGCCTAACCCTGGCCACCAGCCCTACAGGCAGCTTTCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGAGTCAAGCAGGTTGGTCCTCCCCCAGGGTGACATGCAAGGGCAATCGTGGTGGTGCCAGGACTGGCTGTGTGGTGGTCTTGGTCATTTGAGGGGCAGAGCCACCGCTGCAGACATTGTCTGCTGGGGAAGGAAGCTAGTGTGAGCGCAGAGCTGTCTCCTTCACTTGACTTGCCTCCCATAGTGGCTTCCCTGGGTGGGCCTGGGCAGAGGGCAAAGTGACTCGGTGACACGGGTGAGAGCTGCTCTGTGCCCACACAG
Seq C2 exon
GGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACCACATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-Fubp3:NM_001033389:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.798 A=NA C2=0.981
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGAGAACATCAAAAGCA
R:
TTTTGATGTGGTGCGGCTGG
Band lengths:
235-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: